| actionsAfterSolve() | DPMBase | protectedvirtual |
| actionsAfterTimeStep() | DPMBase | protectedvirtual |
| actionsBeforeTimeLoop() | DPMBase | protectedvirtual |
| actionsBeforeTimeStep() override | Mercury3DRestart | inlineprivatevirtual |
| actionsBeforeTimeStep() override | Mercury3DRestart | inlineprivatevirtual |
| actionsOnRestart() | DPMBase | protectedvirtual |
| append_ | DPMBase | private |
| areInContact(const BaseParticle *pI, const BaseParticle *pJ) | DPMBase | static |
| autoNumber() | DPMBase | |
| backgroundDrag_ | DPMBase | private |
| boundaryHandler | DPMBase | |
| boundaryVTKWriter_ | DPMBase | private |
| cgHandler | DPMBase | |
| checkAndDuplicatePeriodicParticles() | DPMBase | protected |
| checkInteractionWithBoundaries() | DPMBase | protectedvirtual |
| checkParticleForInteraction(const BaseParticle &P) final | MercuryBase | virtual |
| checkParticleForInteractionLocal(const BaseParticle &P) final | MercuryBase | virtual |
| checkParticleForInteractionLocalPeriodic(const BaseParticle &P) | DPMBase | |
| checkSettings() | DPMBase | |
| clock_ | DPMBase | |
| closeFiles() | DPMBase | |
| clusterCommand_ | Mercury3DRestart | private |
| computeAdditionalForces() | DPMBase | inlineprotectedvirtual |
| computeAllForces() | DPMBase | protectedvirtual |
| computeExternalForces(BaseParticle *) | DPMBase | protectedvirtual |
| computeForcesDueToWalls(BaseParticle *, BaseWall *) | DPMBase | protectedvirtual |
| computeInternalForce(BaseParticle *, BaseParticle *) | DPMBase | protectedvirtual |
| computeInternalForces(BaseParticle *obj) override | Mercury3D | protectedvirtual |
| computeOneTimeStep() | DPMBase | virtual |
| computeWallForces(BaseWall *w) override | Mercury3D | protectedvirtual |
| constructor() | Mercury3D | |
| continueFlag_ | DPMBase | privatestatic |
| continueSolve() const | DPMBase | protectedvirtual |
| currentMaxRelativeDisplacement_ | MercuryBase | private |
| dataFile | DPMBase | |
| decompose() | DPMBase | virtual |
| deleteGhostParticles(std::set< BaseParticle * > &particlesToBeDeleted) | DPMBase | protected |
| domainHandler | DPMBase | |
| DomainSplit enum name | DPMBase | |
| DPMBase() | DPMBase | |
| DPMBase(const DPMBase &other) | DPMBase | |
| eneFile | DPMBase | |
| fillDomainWithParticles(unsigned N=50) | DPMBase | |
| finaliseSolve() | DPMBase | |
| findNextExistingDataFile(Mdouble tMin, bool verbose=true) | DPMBase | |
| finishStatistics() | DPMBase | protectedvirtual |
| forceWriteOutputFiles() | DPMBase | |
| forceWritePythonFileForVTKVisualisation_ | DPMBase | private |
| fStatFile | DPMBase | |
| gatherContactStatistics(unsigned int index1, int index2, Vec3D Contact, Mdouble delta, Mdouble ctheta, Mdouble fdotn, Mdouble fdott, Vec3D P1_P2_normal_, Vec3D P1_P2_tangential) | DPMBase | virtual |
| gatherContactStatistics() | DPMBase | protected |
| get1DParametersFromRunNumber(int size_x) const | DPMBase | |
| get2DParametersFromRunNumber(int size_x, int size_y) const | DPMBase | |
| get3DParametersFromRunNumber(int size_x, int size_y, int size_z) const | DPMBase | |
| getAppend() const | DPMBase | |
| getBackgroundDrag() const | DPMBase | inline |
| getCentreOfMass() const | DPMBase | |
| getClusterCommand() const | Mercury3DRestart | inline |
| getCPUTime() | DPMBase | inline |
| getCurrentDomain() | DPMBase | |
| getDataFile() | DPMBase | |
| getDataFile() const | DPMBase | |
| getElasticEnergy() const | DPMBase | |
| getEneFile() | DPMBase | |
| getEneFile() const | DPMBase | |
| getFStatFile() | DPMBase | |
| getFStatFile() const | DPMBase | |
| getGravitationalEnergy() const | DPMBase | |
| getGravity() const | DPMBase | |
| getHGrid() | MercuryBase | inlineprotected |
| getHGrid() const | MercuryBase | inlineprotected |
| getHGridCellOverSizeRatio() const | MercuryBase | |
| getHGridCurrentMaxRelativeDisplacement() const | MercuryBase | |
| getHGridDistribution() const | MercuryBase | |
| getHGridMaxLevels() const | MercuryBase | |
| getHGridMethod() const | MercuryBase | inline |
| getHGridTargetMaxInteractionRadius() const | MercuryBase | virtual |
| getHGridTargetMinInteractionRadius() const | MercuryBase | virtual |
| getHGridTargetNumberOfBuckets() const | MercuryBase | virtual |
| getHGridTotalCurrentMaxRelativeDisplacement() const | MercuryBase | |
| getHGridUpdateEachTimeStep() const final | MercuryBase | virtual |
| getInfo(const BaseParticle &P) const | DPMBase | virtual |
| getInitialWallTime() const | Mercury3DRestart | inline |
| getInteractionFile() | DPMBase | |
| getInteractionFile() const | DPMBase | |
| getKineticEnergy() const | DPMBase | |
| getKineticStress() const | DPMBase | |
| getMax() const | DPMBase | inline |
| getMaxWallTime() const | Mercury3DRestart | inline |
| getMin() const | DPMBase | inline |
| getName() const | DPMBase | |
| getNextTime() const | DPMBase | |
| getNToWrite() const | DPMBase | |
| getNumberOfDomains() | DPMBase | |
| getNumberOfOMPThreads() const | DPMBase | |
| getNumberOfTimeSteps() const | DPMBase | |
| getParticleDimensions() const | DPMBase | |
| getParticlesWriteVTK() const | DPMBase | |
| getRestarted() const | DPMBase | |
| getRestartFile() | DPMBase | |
| getRestartFile() const | DPMBase | |
| getRestartVersion() const | DPMBase | |
| getRotation() const | DPMBase | inline |
| getRotationalEnergy() const | DPMBase | |
| getRunNumber() const | DPMBase | |
| getStatFile() | DPMBase | |
| getStatFile() const | DPMBase | |
| getStaticStress() const | DPMBase | |
| getSuperquadricParticlesWriteVTK() const | DPMBase | |
| getSystemDimensions() const | DPMBase | |
| getTime() const | DPMBase | |
| getTimeMax() const | DPMBase | |
| getTimeStep() const | DPMBase | |
| getTotalEnergy() const | DPMBase | |
| getTotalMass() const | DPMBase | |
| getTotalMomentum() const | DPMBase | |
| getTotalStress() const | DPMBase | |
| getTotalVolume() const | DPMBase | |
| getVtkWriter() const | DPMBase | |
| getWallsWriteVTK() const | DPMBase | |
| getWallTime() const | Mercury3DRestart | inline |
| Mercury3D::getWallTime() | DPMBase | inline |
| getWallVTKWriter() | DPMBase | |
| getWritePythonFileForVTKVisualisation() const | DPMBase | |
| getXBallsAdditionalArguments() const | DPMBase | |
| getXBallsColourMode() const | DPMBase | |
| getXBallsScale() const | DPMBase | |
| getXBallsVectorScale() const | DPMBase | |
| getXCenter() const | DPMBase | inline |
| getXMax() const | DPMBase | inline |
| getXMin() const | DPMBase | inline |
| getYCenter() const | DPMBase | inline |
| getYMax() const | DPMBase | inline |
| getYMin() const | DPMBase | inline |
| getZCenter() const | DPMBase | inline |
| getZMax() const | DPMBase | inline |
| getZMin() const | DPMBase | inline |
| gravity_ | DPMBase | private |
| grid | MercuryBase | private |
| gridNeedsUpdate_ | MercuryBase | private |
| handleParticleAddition(unsigned int id, BaseParticle *p) | DPMBase | virtual |
| handleParticleRemoval(unsigned int id) | DPMBase | virtual |
| hGridActionsAfterIntegration() override | MercuryBase | protectedvirtual |
| hGridActionsBeforeIntegration() override | MercuryBase | protectedvirtual |
| hGridActionsBeforeTimeLoop() override | MercuryBase | virtual |
| hGridActionsBeforeTimeStep() override | MercuryBase | virtual |
| hGridCellOverSizeRatio_ | MercuryBase | private |
| hGridDistribution_ | MercuryBase | private |
| hGridFindContactsWithinTargetCell(int x, int y, int z, unsigned int l) | Mercury3D | protected |
| hGridFindContactsWithTargetCell(int x, int y, int z, unsigned int l, BaseParticle *obj) | Mercury3D | protected |
| hGridFindParticleContacts(const BaseParticle *obj) override | Mercury3D | virtual |
| hGridFindParticlesWithTargetCell(int x, int y, int z, unsigned int l, BaseParticle *obj, std::vector< BaseParticle * > &list) | Mercury3D | protected |
| hGridGetInteractingParticleList(BaseParticle *obj, std::vector< BaseParticle * > &list) override | Mercury3D | protectedvirtual |
| hGridHasContactsInTargetCell(int x, int y, int z, unsigned int l, const BaseParticle *obj) const | Mercury3D | protected |
| hGridHasParticleContacts(const BaseParticle *obj) override | Mercury3D | protectedvirtual |
| hGridInfo(std::ostream &os=std::cout) const | MercuryBase | |
| hGridInsertParticle(BaseParticle *obj) final | MercuryBase | protected |
| DPMBase::hGridInsertParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| hGridMaxLevels_ | MercuryBase | private |
| hGridMethod_ | MercuryBase | private |
| hGridNeedsRebuilding() | MercuryBase | |
| hGridRebuild() | MercuryBase | protected |
| hGridRemoveParticle(BaseParticle *obj) override | Mercury3D | protected |
| MercuryBase::hGridRemoveParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| hGridUpdateMove(BaseParticle *iP, Mdouble move) final | MercuryBase | protectedvirtual |
| hGridUpdateParticle(BaseParticle *obj) override | Mercury3D | protected |
| MercuryBase::hGridUpdateParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| importParticlesAs(ParticleHandler &particleHandler, InteractionHandler &interactionHandler, const ParticleSpecies *species) | DPMBase | |
| incrementRunNumberInFile() | DPMBase | static |
| initialiseSolve() | DPMBase | |
| initialiseStatistics() | DPMBase | protectedvirtual |
| initialWallTime_ | Mercury3DRestart | private |
| insertGhostParticle(BaseParticle *P) | DPMBase | |
| integrateAfterForceComputation() | DPMBase | protectedvirtual |
| integrateBeforeForceComputation() | DPMBase | protectedvirtual |
| interactionFile | DPMBase | |
| interactionHandler | DPMBase | |
| interactionVTKWriter_ | DPMBase | private |
| isTimeEqualTo(Mdouble time) const | DPMBase | protected |
| launchNewRun(const char *name, bool quick=false) | DPMBase | |
| max_ | DPMBase | private |
| maxWallTime_ | Mercury3DRestart | private |
| Mercury3D() | Mercury3D | |
| Mercury3D(const DPMBase &other) | Mercury3D | explicit |
| Mercury3D(const Mercury3D &other) | Mercury3D | |
| Mercury3DRestart() | Mercury3DRestart | inline |
| MercuryBase() | MercuryBase | |
| MercuryBase(const MercuryBase &mercuryBase) | MercuryBase | |
| min_ | DPMBase | private |
| mpiInsertParticleCheck(BaseParticle *P) | DPMBase | |
| mpiIsInCommunicationZone(BaseParticle *particle) | DPMBase | |
| name_ | DPMBase | private |
| nToWrite_ | DPMBase | private |
| numberOfDomains_ | DPMBase | private |
| numberOfOMPThreads_ | DPMBase | private |
| numberOfTimeSteps_ | DPMBase | private |
| outputInteractionDetails() const | DPMBase | protected |
| outputStatistics() | DPMBase | protectedvirtual |
| outputXBallsData(std::ostream &os) const | DPMBase | protectedvirtual |
| outputXBallsDataParticle(unsigned int i, unsigned int format, std::ostream &os) const | DPMBase | protectedvirtual |
| paoloParticleHandler | DPMBase | |
| particleDimensions_ | DPMBase | private |
| particleHandler | DPMBase | |
| performGhostParticleUpdate() | DPMBase | protected |
| performGhostVelocityUpdate() | DPMBase | protected |
| periodicBoundaryHandler | DPMBase | |
| printTime() const | DPMBase | protectedvirtual |
| processStatistics(bool) | DPMBase | protectedvirtual |
| random | DPMBase | |
| read(std::istream &is, ReadOptions opt=ReadOptions::ReadAll) override | MercuryBase | virtual |
| readArguments(int argc, char *argv[]) | DPMBase | |
| readDataFile(std::string fileName="", unsigned int format=0) | DPMBase | |
| readNextArgument(int &i, int argc, char *argv[]) override | Mercury3DRestart | inlinevirtual |
| readNextDataFile(unsigned int format=0) | DPMBase | |
| readNextFStatFile() | DPMBase | |
| readOld(std::istream &is) | DPMBase | virtual |
| ReadOptions enum name | DPMBase | |
| readParAndIniFiles(std::string fileName) | DPMBase | |
| readRestartFile(ReadOptions opt=ReadOptions::ReadAll) | DPMBase | |
| readRestartFile(std::string fileName, ReadOptions opt=ReadOptions::ReadAll) | DPMBase | |
| readRunNumberFromFile() | DPMBase | static |
| readSpeciesFromDataFile(bool read=true) | DPMBase | inline |
| readSpeciesFromDataFile_ | DPMBase | private |
| readUserDefinedWall(const std::string &type) const | DPMBase | inlinevirtual |
| removeDuplicatePeriodicParticles() | DPMBase | protected |
| removeOldFiles() const | DPMBase | |
| resetFileCounter() | DPMBase | |
| restarted_ | DPMBase | private |
| restartFile | DPMBase | |
| restartVersion_ | DPMBase | private |
| rotation_ | DPMBase | private |
| runNumber_ | DPMBase | private |
| setAppend(bool newAppendFlag) | DPMBase | |
| setBackgroundDrag(Mdouble backgroundDrag) | DPMBase | inline |
| setClusterCommand(std::string clusterCommand) | Mercury3DRestart | inline |
| setDimension(unsigned int newDim) | DPMBase | |
| setDomain(const Vec3D &min, const Vec3D &max) | DPMBase | |
| setFileType(FileType fileType) | DPMBase | |
| setFixedParticles(unsigned int n) | DPMBase | protected |
| setGravity(Vec3D newGravity) | DPMBase | |
| setHGridCellOverSizeRatio(Mdouble cellOverSizeRatio) | MercuryBase | |
| setHGridDistribution(HGridDistribution hGridDistribution) | MercuryBase | |
| setHGridMaxLevels(unsigned int HGridMaxLevels) | MercuryBase | |
| setHGridMethod(HGridMethod hGridMethod) | MercuryBase | |
| setHGridUpdateEachTimeStep(bool updateEachTimeStep) | MercuryBase | |
| setInteractionsWriteVTK(bool) | DPMBase | |
| setLastSavedTimeStep(unsigned int nextSavedTimeStep) | DPMBase | |
| setLogarithmicSaveCount(Mdouble logarithmicSaveCountBase) | DPMBase | |
| setMax(const Vec3D &max) | DPMBase | |
| setMax(Mdouble, Mdouble, Mdouble) | DPMBase | |
| setMaxWallTime(Mdouble maxWallTime) | Mercury3DRestart | inline |
| setMeanVelocity(Vec3D V_mean_goal) | DPMBase | |
| setMeanVelocityAndKineticEnergy(Vec3D V_mean_goal, Mdouble Ek_goal) | DPMBase | |
| setMin(const Vec3D &min) | DPMBase | |
| setMin(Mdouble, Mdouble, Mdouble) | DPMBase | |
| setName(const std::string &name) | DPMBase | |
| setName(const char *name) | DPMBase | |
| setNToWrite(int nToWrite) | DPMBase | |
| setNumberOfDomains(std::vector< unsigned > direction) | DPMBase | |
| setNumberOfOMPThreads(int numberOfOMPThreads) | DPMBase | |
| setOpenMode(std::fstream::openmode openMode) | DPMBase | |
| setParticleDimensions(unsigned int particleDimensions) | DPMBase | |
| setParticlesWriteVTK(bool writeParticlesVTK) | DPMBase | |
| setRestarted(bool newRestartedFlag) | DPMBase | |
| setRestartVersion(std::string newRV) | DPMBase | |
| setRotation(bool rotation) | DPMBase | inline |
| setRunNumber(int runNumber) | DPMBase | |
| setSaveCount(unsigned int saveCount) | DPMBase | |
| setSoftStop() | DPMBase | protected |
| setSuperquadricParticlesWriteVTK(bool writeSuperquadricParticlesVTK) | DPMBase | |
| setSystemDimensions(unsigned int newDim) | DPMBase | |
| setTime(Mdouble time) | DPMBase | |
| setTimeMax(Mdouble newTMax) | DPMBase | |
| setTimeStep(Mdouble newDt) | DPMBase | |
| setupInitialConditions() override | Mercury3DRestart | inlineprivatevirtual |
| setupInitialConditions() override | Mercury3DRestart | inlineprivatevirtual |
| setWallsWriteVTK(FileType writeWallsVTK) | DPMBase | |
| setWallsWriteVTK(bool) | DPMBase | |
| setWritePythonFileForVTKVisualisation(bool forceWritePythonFileForVTKVisualisation) | DPMBase | |
| setXBallsAdditionalArguments(std::string newXBArgs) | DPMBase | |
| setXBallsColourMode(int newCMode) | DPMBase | |
| setXBallsScale(Mdouble newScale) | DPMBase | |
| setXBallsVectorScale(double newVScale) | DPMBase | |
| setXMax(Mdouble newXMax) | DPMBase | |
| setXMin(Mdouble newXMin) | DPMBase | |
| setYMax(Mdouble newYMax) | DPMBase | |
| setYMin(Mdouble newYMin) | DPMBase | |
| setZMax(Mdouble newZMax) | DPMBase | |
| setZMin(Mdouble newZMin) | DPMBase | |
| signalHandler(int signal) | DPMBase | protectedstatic |
| solve() | DPMBase | |
| solve(int argc, char *argv[]) | DPMBase | |
| speciesHandler | DPMBase | |
| splitDomain(DomainSplit domainSplit) | DPMBase | |
| statFile | DPMBase | |
| synchroniseParticle(BaseParticle *, unsigned fromProcessor=0) | DPMBase | protected |
| systemDimensions_ | DPMBase | private |
| time | Mercury3DRestart | |
| time_ | DPMBase | private |
| timeMax_ | DPMBase | private |
| timeStep_ | DPMBase | private |
| totalCurrentMaxRelativeDisplacement_ | MercuryBase | private |
| updateEachTimeStep_ | MercuryBase | private |
| updateGhostGrid(BaseParticle *P) | DPMBase | |
| userHGridCellSize(unsigned int level) | MercuryBase | virtual |
| vtkWriter_ | DPMBase | private |
| wallDetailsVTKWriter_ | DPMBase | private |
| wallHandler | DPMBase | |
| wallVTKWriter_ | DPMBase | private |
| write(std::ostream &os, bool writeAllParticles=true) const override | MercuryBase | virtual |
| writeDataFile() | DPMBase | |
| writeEneFile() | DPMBase | |
| writeEneHeader(std::ostream &os) const | DPMBase | protectedvirtual |
| writeEneTimeStep(std::ostream &os) const | DPMBase | protectedvirtual |
| writeFStatFile() | DPMBase | |
| writeFstatHeader(std::ostream &os) const | DPMBase | protectedvirtual |
| writeOutputFiles() override | Mercury3DRestarter | inlineprivatevirtual |
| writeParticlesVTK_ | DPMBase | private |
| writePythonFileForVTKVisualisation() const | DPMBase | |
| writeRestartFile() | DPMBase | virtual |
| writeSuperquadricParticlesVTK_ | DPMBase | private |
| writeVTKFiles() const | DPMBase | protected |
| writeXBallsScript() const | DPMBase | virtual |
| xBallsAdditionalArguments_ | DPMBase | private |
| xBallsColourMode_ | DPMBase | private |
| xBallsScale_ | DPMBase | private |
| xBallsVectorScale_ | DPMBase | private |
| ~DPMBase() | DPMBase | virtual |
| ~MercuryBase() override | MercuryBase | |
1.9.1