BaseCluster Member List

This is the complete list of members for BaseCluster, including all inherited members.

actionsAfterSolve() overrideBaseClustervirtual
actionsAfterTimeStep() overrideBaseClustervirtual
actionsBeforeTimeLoop()DPMBaseprotectedvirtual
actionsBeforeTimeStep()DPMBaseprotectedvirtual
actionsOnRestart() overrideBaseClustervirtual
adjacencyMatrix_BaseClusterprivate
amatFile_BaseClusterprivate
append_DPMBaseprivate
applyCentralForce()BaseClusterprivate
areInContact(const BaseParticle *pI, const BaseParticle *pJ)DPMBasestatic
autoNumber()DPMBase
backgroundDrag_DPMBaseprivate
BaseCluster()BaseCluster
boundaryHandlerDPMBase
boundaryVTKWriter_DPMBaseprivate
boxSize_BaseClusterprivate
calculateTimeStep()BaseClusterprivate
cdatFile_BaseClusterprivate
centerOfMass_BaseClusterprivate
cgHandlerDPMBase
checkAndDuplicatePeriodicParticles()DPMBaseprotected
checkInteractionWithBoundaries()DPMBaseprotectedvirtual
checkParticleForInteraction(const BaseParticle &P) finalMercuryBasevirtual
checkParticleForInteractionLocal(const BaseParticle &P) finalMercuryBasevirtual
checkParticleForInteractionLocalPeriodic(const BaseParticle &P)DPMBase
checkSettings()DPMBase
clock_DPMBase
closeFiles()DPMBase
clusterTimeMax_BaseClusterprivate
clusterVelocity_BaseClusterprivate
collisionTimeOverTimeStep_BaseClusterprivate
computeAdditionalForces()DPMBaseinlineprotectedvirtual
computeAllForces()DPMBaseprotectedvirtual
computeExternalForces(BaseParticle *)DPMBaseprotectedvirtual
computeForcesDueToWalls(BaseParticle *, BaseWall *)DPMBaseprotectedvirtual
computeInternalForce(BaseParticle *, BaseParticle *)DPMBaseprotectedvirtual
computeInternalForces(BaseParticle *obj) overrideMercury3Dprotectedvirtual
computeInternalStructure()BaseClusterprivate
computeOneTimeStep()DPMBasevirtual
computeWallForces(BaseWall *w) overrideMercury3Dprotectedvirtual
constructor()Mercury3D
continueFlag_DPMBaseprivatestatic
continueSolve() constDPMBaseprotectedvirtual
createAdjacencyMatrix()BaseClusterprivate
currentMaxRelativeDisplacement_MercuryBaseprivate
dampForce()BaseClusterprivate
dampVelocities()BaseClusterprivate
dataFileDPMBase
decompose()DPMBasevirtual
decreaseForce()BaseClusterprivate
deleteGhostParticles(std::set< BaseParticle * > &particlesToBeDeleted)DPMBaseprotected
dissipationDuration_BaseClusterprivate
doAmatOutput(bool iAOO)BaseCluster
doCdatOutput(bool iCOO)BaseCluster
doEneOutput(bool isEneOutputOn)BaseCluster
doFStatOutput(bool isfStatOutputOn)BaseCluster
doIntStrucOutput(bool iISOO)BaseCluster
domainHandlerDPMBase
DomainSplit enum nameDPMBase
doOverlOutput(bool iOOO)BaseCluster
doRestartOutput(bool isRestartOutputOn)BaseCluster
doVtkOutput(bool iVOO)BaseCluster
DPMBase()DPMBase
DPMBase(const DPMBase &other)DPMBase
eneFileDPMBase
energyRatioTolerance_BaseClusterprivate
fileOutputTimeInterval_BaseClusterprivate
fillDomainWithParticles(unsigned N=50)DPMBase
finaliseSolve()DPMBase
findNextExistingDataFile(Mdouble tMin, bool verbose=true)DPMBase
finishStatistics()DPMBaseprotectedvirtual
forceDampingModulus_BaseClusterprivate
forceModulus_BaseClusterprivate
forceTuningDuration_BaseClusterprivate
forceTuningInterval_BaseClusterprivate
forceWriteOutputFiles()DPMBase
forceWritePythonFileForVTKVisualisation_DPMBaseprivate
fStatFileDPMBase
gatherContactStatistics(unsigned int index1, int index2, Vec3D Contact, Mdouble delta, Mdouble ctheta, Mdouble fdotn, Mdouble fdott, Vec3D P1_P2_normal_, Vec3D P1_P2_tangential)DPMBasevirtual
gatherContactStatistics()DPMBaseprotected
get1DParametersFromRunNumber(int size_x) constDPMBase
get2DParametersFromRunNumber(int size_x, int size_y) constDPMBase
get3DParametersFromRunNumber(int size_x, int size_y, int size_z) constDPMBase
getAppend() constDPMBase
getAverageOverlap()BaseCluster
getBackgroundDrag() constDPMBaseinline
getCentreOfMass() constDPMBase
getClusterId() constBaseCluster
getCollisionTimeOverTimeStep() constBaseCluster
getCPUTime()DPMBaseinline
getCurrentDomain()DPMBase
getDataFile()DPMBase
getDataFile() constDPMBase
getElasticEnergy() constDPMBase
getEneFile()DPMBase
getEneFile() constDPMBase
getEnergyRatioTolerance() constBaseCluster
getFinalMassFraction()BaseCluster
getFStatFile()DPMBase
getFStatFile() constDPMBase
getGravitationalEnergy() constDPMBase
getGravity() constDPMBase
getHGrid()MercuryBaseinlineprotected
getHGrid() constMercuryBaseinlineprotected
getHGridCellOverSizeRatio() constMercuryBase
getHGridCurrentMaxRelativeDisplacement() constMercuryBase
getHGridDistribution() constMercuryBase
getHGridMaxLevels() constMercuryBase
getHGridMethod() constMercuryBaseinline
getHGridTargetMaxInteractionRadius() constMercuryBasevirtual
getHGridTargetMinInteractionRadius() constMercuryBasevirtual
getHGridTargetNumberOfBuckets() constMercuryBasevirtual
getHGridTotalCurrentMaxRelativeDisplacement() constMercuryBase
getHGridUpdateEachTimeStep() const finalMercuryBasevirtual
getInfo(const BaseParticle &P) constDPMBasevirtual
getInteractionFile()DPMBase
getInteractionFile() constDPMBase
getKineticEnergy() constDPMBase
getKineticStress() constDPMBase
getMax() constDPMBaseinline
getMeanClusterRadius()BaseCluster
getMin() constDPMBaseinline
getName() constDPMBase
getNextTime() constDPMBase
getNToWrite() constDPMBase
getNumberOfDomains()DPMBase
getNumberOfInternalStructurePoints() constBaseCluster
getNumberOfOMPThreads() constDPMBase
getNumberOfParticles() constBaseCluster
getNumberOfTimeSteps() constDPMBase
getParticleDimensions() constDPMBase
getParticleSpecies() constBaseCluster
getParticlesWriteVTK() constDPMBase
getPosition() constBaseCluster
getRadiusParticle() constBaseCluster
getRestarted() constDPMBase
getRestartFile()DPMBase
getRestartFile() constDPMBase
getRestartVersion() constDPMBase
getRotation() constDPMBaseinline
getRotationalEnergy() constDPMBase
getRunNumber() constDPMBase
getSizeDispersityParticle() constBaseCluster
getStatFile()DPMBase
getStatFile() constDPMBase
getStaticStress() constDPMBase
getSuperquadricParticlesWriteVTK() constDPMBase
getSystemDimensions() constDPMBase
getTime() constDPMBase
getTimeMax() constDPMBase
getTimeStep() constDPMBase
getTotalEnergy() constDPMBase
getTotalMass() constDPMBase
getTotalMomentum() constDPMBase
getTotalStress() constDPMBase
getTotalVolume() constDPMBase
getVelocity()BaseCluster
getVelocityDampingModulus() constBaseCluster
getVtkWriter() constDPMBase
getWallsWriteVTK() constDPMBase
getWallTime()DPMBaseinline
getWallVTKWriter()DPMBase
getWritePythonFileForVTKVisualisation() constDPMBase
getXBallsAdditionalArguments() constDPMBase
getXBallsColourMode() constDPMBase
getXBallsScale() constDPMBase
getXBallsVectorScale() constDPMBase
getXCenter() constDPMBaseinline
getXMax() constDPMBaseinline
getXMin() constDPMBaseinline
getYCenter() constDPMBaseinline
getYMax() constDPMBaseinline
getYMin() constDPMBaseinline
getZCenter() constDPMBaseinline
getZMax() constDPMBaseinline
getZMin() constDPMBaseinline
gnuplotFile_BaseClusterprivate
gravity_DPMBaseprivate
gridMercuryBaseprivate
gridNeedsUpdate_MercuryBaseprivate
handleParticleAddition(unsigned int id, BaseParticle *p)DPMBasevirtual
handleParticleRemoval(unsigned int id)DPMBasevirtual
hGridActionsAfterIntegration() overrideMercuryBaseprotectedvirtual
hGridActionsBeforeIntegration() overrideMercuryBaseprotectedvirtual
hGridActionsBeforeTimeLoop() overrideMercuryBasevirtual
hGridActionsBeforeTimeStep() overrideMercuryBasevirtual
hGridCellOverSizeRatio_MercuryBaseprivate
hGridDistribution_MercuryBaseprivate
hGridFindContactsWithinTargetCell(int x, int y, int z, unsigned int l)Mercury3Dprotected
hGridFindContactsWithTargetCell(int x, int y, int z, unsigned int l, BaseParticle *obj)Mercury3Dprotected
hGridFindParticleContacts(const BaseParticle *obj) overrideMercury3Dvirtual
hGridFindParticlesWithTargetCell(int x, int y, int z, unsigned int l, BaseParticle *obj, std::vector< BaseParticle * > &list)Mercury3Dprotected
hGridGetInteractingParticleList(BaseParticle *obj, std::vector< BaseParticle * > &list) overrideMercury3Dprotectedvirtual
hGridHasContactsInTargetCell(int x, int y, int z, unsigned int l, const BaseParticle *obj) constMercury3Dprotected
hGridHasParticleContacts(const BaseParticle *obj) overrideMercury3Dprotectedvirtual
hGridInfo(std::ostream &os=std::cout) constMercuryBase
hGridInsertParticle(BaseParticle *obj) finalMercuryBaseprotected
DPMBase::hGridInsertParticle(BaseParticle *obj UNUSED)DPMBasevirtual
hGridMaxLevels_MercuryBaseprivate
hGridMethod_MercuryBaseprivate
hGridNeedsRebuilding()MercuryBase
hGridRebuild()MercuryBaseprotected
hGridRemoveParticle(BaseParticle *obj) overrideMercury3Dprotected
MercuryBase::hGridRemoveParticle(BaseParticle *obj UNUSED)DPMBasevirtual
hGridUpdateMove(BaseParticle *iP, Mdouble move) finalMercuryBaseprotectedvirtual
hGridUpdateParticle(BaseParticle *obj) overrideMercury3Dprotected
MercuryBase::hGridUpdateParticle(BaseParticle *obj UNUSED)DPMBasevirtual
idCluster_BaseClusterprivate
importParticlesAs(ParticleHandler &particleHandler, InteractionHandler &interactionHandler, const ParticleSpecies *species)DPMBase
increaseForce()BaseClusterprivate
incrementRunNumberInFile()DPMBasestatic
initialiseSolve()DPMBase
initialiseStatistics()DPMBaseprotectedvirtual
insertGhostParticle(BaseParticle *P)DPMBase
insertParticles()BaseClusterprivate
integrateAfterForceComputation()DPMBaseprotectedvirtual
integrateBeforeForceComputation()DPMBaseprotectedvirtual
interactionFileDPMBase
interactionHandlerDPMBase
interactionVTKWriter_DPMBaseprivate
intStructFile_BaseClusterprivate
isAmatOutputOn() constBaseCluster
isAmatOutputOn_BaseClusterprivate
isCdatOutputOn() constBaseCluster
isCdatOutputOn_BaseClusterprivate
isEneOutputOn() constBaseCluster
isEneOutputOn_BaseClusterprivate
isFStatOutputOn() constBaseCluster
isFStatOutputOn_BaseClusterprivate
isIntStrucOutputOn() constBaseCluster
isIntStrucOutputOn_BaseClusterprivate
isOverlOutputOn() constBaseCluster
isOverlOutputOn_BaseClusterprivate
isRestartOutputOn() constBaseCluster
isRestartOutputOn_BaseClusterprivate
isTimeEqualTo(Mdouble time) constDPMBaseprotected
isVtkOutputOn() constBaseCluster
isVtkOutputOn_BaseClusterprivate
launchNewRun(const char *name, bool quick=false)DPMBase
makeAmatFile()BaseClusterprivate
makeCdatFile()BaseClusterprivate
makeDataAnalysis()BaseClusterprivate
makeGnuplotFile()BaseClusterprivate
makeIntenalStructureFile()BaseClusterprivate
makeOverlFile()BaseClusterprivate
massParticle_BaseClusterprivate
max_DPMBaseprivate
maximumForceModulus_BaseClusterprivate
maxRelativeOverlap_BaseClusterprivate
meanClusterRadius_BaseClusterprivate
meanCoordinationNumber_BaseClusterprivate
meanRelativeOverlap_BaseClusterprivate
Mercury3D()Mercury3D
Mercury3D(const DPMBase &other)Mercury3Dexplicit
Mercury3D(const Mercury3D &other)Mercury3D
MercuryBase()MercuryBase
MercuryBase(const MercuryBase &mercuryBase)MercuryBase
min_DPMBaseprivate
minRelativeOverlap_BaseClusterprivate
mpiInsertParticleCheck(BaseParticle *P)DPMBase
mpiIsInCommunicationZone(BaseParticle *particle)DPMBase
name_DPMBaseprivate
nInternalStructurePoints_BaseClusterprivate
nIntraClusterBonds_BaseClusterprivate
nParticles_BaseClusterprivate
nToWrite_DPMBaseprivate
numberOfDomains_DPMBaseprivate
numberOfOMPThreads_DPMBaseprivate
numberOfTimeSteps_DPMBaseprivate
outputInteractionDetails() constDPMBaseprotected
outputStatistics()DPMBaseprotectedvirtual
outputXBallsData(std::ostream &os) constDPMBaseprotectedvirtual
outputXBallsDataParticle(unsigned int i, unsigned int format, std::ostream &os) constDPMBaseprotectedvirtual
overlFile_BaseClusterprivate
paoloParticleHandlerDPMBase
particleDimensions_DPMBaseprivate
particleHandlerDPMBase
particleInsertionSuccessful(int n)BaseClusterprivate
particleSpecies_BaseClusterprivate
performGhostParticleUpdate()DPMBaseprotected
performGhostVelocityUpdate()DPMBaseprotected
periodicBoundaryHandlerDPMBase
position_BaseClusterprivate
printTime() const overrideBaseClustervirtual
processStatistics(bool)DPMBaseprotectedvirtual
radii_BaseClusterprivate
radiusCluster_BaseClusterprivate
radiusForSolidFraction_BaseClusterprivate
radiusParticle_BaseClusterprivate
randomDPMBase
read(std::istream &is, ReadOptions opt=ReadOptions::ReadAll) overrideBaseClustervirtual
readArguments(int argc, char *argv[])DPMBase
readDataFile(std::string fileName="", unsigned int format=0)DPMBase
readNextArgument(int &i, int argc, char *argv[]) overrideMercuryBaseprotectedvirtual
readNextDataFile(unsigned int format=0)DPMBase
readNextFStatFile()DPMBase
readOld(std::istream &is)DPMBasevirtual
ReadOptions enum nameDPMBase
readParAndIniFiles(std::string fileName)DPMBase
readRestartFile(ReadOptions opt=ReadOptions::ReadAll)DPMBase
readRestartFile(std::string fileName, ReadOptions opt=ReadOptions::ReadAll)DPMBase
readRunNumberFromFile()DPMBasestatic
readSpeciesFromDataFile(bool read=true)DPMBaseinline
readSpeciesFromDataFile_DPMBaseprivate
readUserDefinedWall(const std::string &type) constDPMBaseinlinevirtual
removeDuplicatePeriodicParticles()DPMBaseprotected
removeOldFiles() constDPMBase
resetFileCounter()DPMBase
restarted_DPMBaseprivate
restartFileDPMBase
restartVersion_DPMBaseprivate
rotation_DPMBaseprivate
runNumber_DPMBaseprivate
setAppend(bool newAppendFlag)DPMBase
setBackgroundDrag(Mdouble backgroundDrag)DPMBaseinline
setClusterId(unsigned int iC)BaseCluster
setCollisionTimeOverTimeStep(Mdouble cTOTS)BaseCluster
setDimension(unsigned int newDim)DPMBase
setDomain(const Vec3D &min, const Vec3D &max)DPMBase
setDomainLimits()BaseClusterprivate
setEnergyRatioTolerance(Mdouble eRT)BaseCluster
setFileType(FileType fileType)DPMBase
setFixedParticles(unsigned int n)DPMBaseprotected
setGravity(Vec3D newGravity)DPMBase
setHGridCellOverSizeRatio(Mdouble cellOverSizeRatio)MercuryBase
setHGridDistribution(HGridDistribution hGridDistribution)MercuryBase
setHGridMaxLevels(unsigned int HGridMaxLevels)MercuryBase
setHGridMethod(HGridMethod hGridMethod)MercuryBase
setHGridUpdateEachTimeStep(bool updateEachTimeStep)MercuryBase
setInteractionsWriteVTK(bool)DPMBase
setLastSavedTimeStep(unsigned int nextSavedTimeStep)DPMBase
setLogarithmicSaveCount(Mdouble logarithmicSaveCountBase)DPMBase
setMax(const Vec3D &max)DPMBase
setMax(Mdouble, Mdouble, Mdouble)DPMBase
setMeanVelocity(Vec3D V_mean_goal)DPMBase
setMeanVelocityAndKineticEnergy(Vec3D V_mean_goal, Mdouble Ek_goal)DPMBase
setMin(const Vec3D &min)DPMBase
setMin(Mdouble, Mdouble, Mdouble)DPMBase
setName(const std::string &name)DPMBase
setName(const char *name)DPMBase
setNToWrite(int nToWrite)DPMBase
setNumberOfDomains(std::vector< unsigned > direction)DPMBase
setNumberOfInternalStructurePoints(int gL)BaseCluster
setNumberOfOMPThreads(int numberOfOMPThreads)DPMBase
setNumberOfParticles(int nP)BaseCluster
setNumberOfParticles_BaseClusterprivate
setOpenMode(std::fstream::openmode openMode)DPMBase
setParticleDimensions(unsigned int particleDimensions)DPMBase
setParticleSpecies(LinearPlasticViscoelasticFrictionSpecies *particleSpecies)BaseCluster
setParticlesWriteVTK(bool writeParticlesVTK)DPMBase
setPosition(Vec3D p)BaseCluster
setRadii()BaseClusterprivate
setRadiusCluster(Mdouble rCR)BaseCluster
setRadiusCluster_BaseClusterprivate
setRadiusParticle(Mdouble rP)BaseCluster
setRadiusParticle_BaseClusterprivate
setRestarted(bool newRestartedFlag)DPMBase
setRestartVersion(std::string newRV)DPMBase
setRotation(bool rotation)DPMBaseinline
setRunNumber(int runNumber)DPMBase
setSaveCount(unsigned int saveCount)DPMBase
setSizeDispersityParticle(Mdouble sDP)BaseCluster
setSoftStop()DPMBaseprotected
setSpecies()BaseClusterprivate
setSuperquadricParticlesWriteVTK(bool writeSuperquadricParticlesVTK)DPMBase
setSystemDimensions(unsigned int newDim)DPMBase
setTime(Mdouble time)DPMBase
setTimeMax(Mdouble newTMax)DPMBase
setTimeStep(Mdouble newDt)DPMBase
setupInitialConditions() overrideBaseClustervirtual
setVelocity(Vec3D v)BaseCluster
setVelocityDampingModulus(Mdouble vDM)BaseCluster
setWallsWriteVTK(FileType writeWallsVTK)DPMBase
setWallsWriteVTK(bool)DPMBase
setWritePythonFileForVTKVisualisation(bool forceWritePythonFileForVTKVisualisation)DPMBase
setXBallsAdditionalArguments(std::string newXBArgs)DPMBase
setXBallsColourMode(int newCMode)DPMBase
setXBallsScale(Mdouble newScale)DPMBase
setXBallsVectorScale(double newVScale)DPMBase
setXMax(Mdouble newXMax)DPMBase
setXMin(Mdouble newXMin)DPMBase
setYMax(Mdouble newYMax)DPMBase
setYMin(Mdouble newYMin)DPMBase
setZMax(Mdouble newZMax)DPMBase
setZMin(Mdouble newZMin)DPMBase
signalHandler(int signal)DPMBaseprotectedstatic
sizeDispersityParticle_BaseClusterprivate
smallestRadius_BaseClusterprivate
solidFraction_BaseClusterprivate
solidFractionIntStruct_BaseClusterprivate
solve()DPMBase
solve(int argc, char *argv[])DPMBase
speciesHandlerDPMBase
splitDomain(DomainSplit domainSplit)DPMBase
stage_BaseClusterprivate
statFileDPMBase
synchroniseParticle(BaseParticle *, unsigned fromProcessor=0)DPMBaseprotected
systemDimensions_DPMBaseprivate
t0_BaseClusterprivate
time_DPMBaseprivate
timeMax_DPMBaseprivate
timeStep_DPMBaseprivate
totalCurrentMaxRelativeDisplacement_MercuryBaseprivate
totalParticleVolume_BaseClusterprivate
updateEachTimeStep_MercuryBaseprivate
updateGhostGrid(BaseParticle *P)DPMBase
userHGridCellSize(unsigned int level)MercuryBasevirtual
velocityDampingInterval_BaseClusterprivate
velocityDampingModulus_BaseClusterprivate
vtkWriter_DPMBaseprivate
wallDetailsVTKWriter_DPMBaseprivate
wallHandlerDPMBase
wallVTKWriter_DPMBaseprivate
write(std::ostream &os, bool writeAllParticles) const overrideBaseClustervirtual
writeAmatFile()BaseClusterprivate
writeDataFile()DPMBase
writeEneFile()DPMBase
writeEneHeader(std::ostream &os) constDPMBaseprotectedvirtual
writeEneTimeStep(std::ostream &os) constDPMBaseprotectedvirtual
writeFStatFile()DPMBase
writeFstatHeader(std::ostream &os) constDPMBaseprotectedvirtual
writeOutputFiles()DPMBasevirtual
writeParticlesVTK_DPMBaseprivate
writePythonFileForVTKVisualisation() constDPMBase
writeRestartFile()DPMBasevirtual
writeSuperquadricParticlesVTK_DPMBaseprivate
writeToCdatFile()BaseClusterprivate
writeToOverlFile()BaseClusterprivate
writeVTKFiles() constDPMBaseprotected
writeXBallsScript() constDPMBasevirtual
xBallsAdditionalArguments_DPMBaseprivate
xBallsColourMode_DPMBaseprivate
xBallsScale_DPMBaseprivate
xBallsVectorScale_DPMBaseprivate
~BaseCluster() finalBaseCluster
~DPMBase()DPMBasevirtual
~MercuryBase() overrideMercuryBase