| actionsAfterSolve() | DPMBase | protectedvirtual |
| actionsAfterTimeStep() | DPMBase | protectedvirtual |
| actionsBeforeTimeLoop() | DPMBase | protectedvirtual |
| actionsBeforeTimeStep() | DPMBase | protectedvirtual |
| actionsOnRestart() | DPMBase | protectedvirtual |
| areInContact(const BaseParticle *pI, const BaseParticle *pJ) const | DPMBase | |
| autoNumber() | FilesAndRunNumber | |
| boundaryHandler | DPMBase | |
| broadPhase(BaseParticle *i) override | MercuryBase | protectedvirtual |
| checkAndDuplicatePeriodicParticles() | DPMBase | protected |
| checkInteractionWithBoundaries() | DPMBase | protectedvirtual |
| checkParticleForInteraction(const BaseParticle &P) override | MercuryBase | virtual |
| checkParticleForInteractionLocal(const BaseParticle &P) override | MercuryBase | virtual |
| checkParticleForInteractionLocalPeriodic(const BaseParticle &P) | DPMBase | |
| checkSettings() | DPMBase | |
| closeFiles() | Files | |
| clusterCommand_ | Mercury3DRestart | private |
| computeAllForces() | DPMBase | protectedvirtual |
| computeExternalForces(BaseParticle *PI) | DPMBase | protectedvirtual |
| computeForcesDueToWalls(BaseParticle *PI) | DPMBase | protectedvirtual |
| computeInternalForces(BaseParticle *i) | DPMBase | protectedvirtual |
| computeInternalForces(BaseParticle *P1, BaseParticle *P2) | DPMBase | protectedvirtual |
| constructor() | Mercury3D | |
| continueSolve() const | DPMBase | protectedvirtual |
| dataFile | Files | |
| domainSize() const | DPMBase | protected |
| DPMBase() | DPMBase | |
| DPMBase(const FilesAndRunNumber &other) | DPMBase | |
| DPMBase(const DPMBase &other) | DPMBase | |
| eneFile | Files | |
| Files() | Files | |
| Files(const Files &other) | Files | |
| FilesAndRunNumber() | FilesAndRunNumber | |
| FilesAndRunNumber(const FilesAndRunNumber &other) | FilesAndRunNumber | |
| findNextExistingDataFile(Mdouble tMin, bool verbose=true) | DPMBase | |
| finishStatistics() | DPMBase | protectedvirtual |
| fStatFile | Files | |
| gatherContactStatistics(unsigned int index1 UNUSED, int index2 UNUSED, Vec3D Contact UNUSED, Mdouble delta UNUSED, Mdouble ctheta UNUSED, Mdouble fdotn UNUSED, Mdouble fdott UNUSED, Vec3D P1_P2_normal_ UNUSED, Vec3D P1_P2_tangential UNUSED) | DPMBase | virtual |
| gatherContactStatistics() | DPMBase | protected |
| get2DParametersFromRunNumber(int size_x, int size_y) | FilesAndRunNumber | |
| getAddLarge() const | DPMBase | |
| getAddSmall() const | DPMBase | |
| getAppend() const | DPMBase | |
| getClusterCommand() const | Mercury3DRestart | inline |
| getDataFile() | Files | |
| getDataFile() const | Files | |
| getDoCGAlways() const | DPMBase | |
| getElasticEnergy() const | DPMBase | |
| getEneFile() | Files | |
| getEneFile() const | Files | |
| getFStatFile() | Files | |
| getFStatFile() const | Files | |
| getGravitationalEnergy() const | DPMBase | |
| getGravity() const | DPMBase | |
| getHGrid() | MercuryBase | protected |
| getHGrid() const | MercuryBase | protected |
| getHGridCellOverSizeRatio() const | MercuryBase | |
| getHGridCurrentMaxRelativeDisplacement() const | MercuryBase | |
| getHGridDistribution() const | MercuryBase | |
| getHGridMaxLevels() const | MercuryBase | |
| getHGridMethod() const | MercuryBase | |
| getHGridTargetMaxInteractionRadius() const | MercuryBase | virtual |
| getHGridTargetMinInteractionRadius() const | MercuryBase | virtual |
| getHGridTargetNumberOfBuckets() const | MercuryBase | virtual |
| getHGridTotalCurrentMaxRelativeDisplacement() const | MercuryBase | |
| getHGridUpdateEachTimeStep() const override | MercuryBase | virtual |
| getInfo(const BaseParticle &P) const | DPMBase | virtual |
| getInitialWallTime() const | Mercury3DRestart | inline |
| getKineticEnergy() const | DPMBase | |
| getMax() const | DPMBase | inline |
| getMaxWallTime() const | Mercury3DRestart | inline |
| getMin() const | DPMBase | inline |
| getName() const | Files | |
| getNtimeSteps() const | DPMBase | |
| getParticleDimensions() const | DPMBase | |
| getParticlesWriteVTK() const | DPMBase | |
| getRestarted() const | DPMBase | |
| getRestartFile() | Files | |
| getRestartFile() const | Files | |
| getRestartVersion() const | DPMBase | |
| getRotation() const | DPMBase | |
| getRunNumber() const | FilesAndRunNumber | |
| getStatFile() | Files | |
| getStatFile() const | Files | |
| getSystemDimensions() const | DPMBase | |
| getTime() const | DPMBase | |
| getTimeMax() const | DPMBase | |
| getTimeStep() const | DPMBase | |
| getWallsWriteVTK() const | DPMBase | |
| getWallTime() const | Mercury3DRestart | inline |
| getXBallsAdditionalArguments() const | DPMBase | |
| getXBallsColourMode() const | DPMBase | |
| getXBallsScale() const | DPMBase | |
| getXBallsVectorScale() const | DPMBase | |
| getXMax() const | DPMBase | |
| getXMin() const | DPMBase | |
| getYMax() const | DPMBase | |
| getYMin() const | DPMBase | |
| getZMax() const | DPMBase | |
| getZMin() const | DPMBase | |
| hGridActionsAfterIntegration() override | MercuryBase | protectedvirtual |
| hGridActionsBeforeIntegration() override | MercuryBase | protectedvirtual |
| hGridActionsBeforeTimeLoop() override | MercuryBase | virtual |
| hGridActionsBeforeTimeStep() override | MercuryBase | virtual |
| hGridFindContactsWithinTargetCell(int x, int y, int z, unsigned int l) | Mercury3D | protectedvirtual |
| hGridFindContactsWithTargetCell(int x, int y, int z, unsigned int l, BaseParticle *obj) | Mercury3D | protectedvirtual |
| hGridFindOneSidedContacts(BaseParticle *obj) override | Mercury3D | protectedvirtual |
| hGridHasContactsInTargetCell(int x, int y, int z, unsigned int l, const BaseParticle *obj) const | Mercury3D | protected |
| hGridHasParticleContacts(const BaseParticle *obj) override | Mercury3D | protectedvirtual |
| hGridInfo() const | MercuryBase | |
| hGridInsertParticle(BaseParticle *obj) override | MercuryBase | protected |
| DPMBase::hGridInsertParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| hGridNeedsRebuilding() | MercuryBase | |
| hGridRebuild() | MercuryBase | protected |
| hGridRemoveParticle(BaseParticle *obj) override | Mercury3D | protected |
| MercuryBase::hGridRemoveParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| hGridUpdateMove(BaseParticle *iP, Mdouble move) override | MercuryBase | protectedvirtual |
| hGridUpdateParticle(BaseParticle *obj) override | Mercury3D | protected |
| MercuryBase::hGridUpdateParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| incrementRunNumberInFile() | FilesAndRunNumber | |
| initialiseStatistics() | DPMBase | protectedvirtual |
| initialiseTangentialSprings() | DPMBase | protected |
| initialWallTime_ | Mercury3DRestart | private |
| integrateAfterForceComputation() | DPMBase | protectedvirtual |
| integrateBeforeForceComputation() | DPMBase | protectedvirtual |
| interactionHandler | DPMBase | |
| isTimeEqualTo(Mdouble time) const | DPMBase | protected |
| launchNewRun(const char *name, bool quick=false) | FilesAndRunNumber | |
| maxWallTime_ | Mercury3DRestart | private |
| Mercury3D() | Mercury3D | |
| Mercury3D(const DPMBase &other) | Mercury3D | |
| Mercury3D(const Mercury3D &other) | Mercury3D | |
| Mercury3DRestart() | Mercury3DRestart | inline |
| MercuryBase() | MercuryBase | |
| MercuryBase(const MercuryBase &mercuryBase) | MercuryBase | |
| openFiles() | Files | |
| outputInteractionDetails() const | DPMBase | protected |
| outputStatistics() | DPMBase | protectedvirtual |
| outputXBallsData(std::ostream &os) const | DPMBase | protectedvirtual |
| outputXBallsDataParticle(const unsigned int i, const unsigned int format, std::ostream &os) const | DPMBase | protectedvirtual |
| particleHandler | DPMBase | |
| printTime() const | DPMBase | protectedvirtual |
| processStatistics(bool usethese UNUSED) | DPMBase | protectedvirtual |
| random | DPMBase | |
| read(std::istream &is) override | MercuryBase | virtual |
| readArguments(int argc, char *argv[]) | DPMBase | |
| readDataFile(const std::string fileName, unsigned int format=0) | DPMBase | |
| readNextArgument(int &i, int argc, char *argv[]) | Mercury3DRestart | inlinevirtual |
| readNextDataFile(unsigned int format=0) | DPMBase | |
| readOld(std::istream &is) | DPMBase | virtual |
| readParAndIniFiles(const std::string fileName) | DPMBase | |
| readRestartFile(bool restarted=true) | DPMBase | |
| readRestartFile(std::string fileName) | DPMBase | |
| readRunNumberFromFile() | FilesAndRunNumber | |
| readUserDefinedWall(std::string type, std::istream &is) | DPMBase | inlinevirtual |
| removeDuplicatePeriodicParticles() | DPMBase | protected |
| resetFileCounter() | Files | |
| restartFile | Files | |
| setAddLarge(int new_addL) | DPMBase | |
| setAddSmall(int new_addS) | DPMBase | |
| setAppend(bool newAppendFlag) | DPMBase | |
| setClusterCommand(std::string clusterCommand) | Mercury3DRestart | inline |
| setDimension(unsigned int newDim) | DPMBase | |
| setDoCGAlways(bool newDoCGFlag) | DPMBase | |
| setFileType(FileType fileType) | Files | |
| setFixedParticles(unsigned int n) | DPMBase | protected |
| setGravity(Vec3D newGravity) | DPMBase | |
| setHGridCellOverSizeRatio(Mdouble cellOverSizeRatio) | MercuryBase | |
| setHGridDistribution(HGridDistribution hGridDistribution) | MercuryBase | |
| setHGridMaxLevels(unsigned int HGridMaxLevels) | MercuryBase | |
| setHGridMethod(HGridMethod hGridMethod) | MercuryBase | |
| setHGridUpdateEachTimeStep(bool updateEachTimeStep) | MercuryBase | |
| setMax(Vec3D max) | DPMBase | |
| setMaxWallTime(Mdouble maxWallTime) | Mercury3DRestart | inline |
| setMin(Vec3D min) | DPMBase | |
| setName(const std::string &name) | Files | |
| setName(const char *name) | Files | |
| setNextSavedTimeStep(unsigned int nextSavedTimeStep) | Files | |
| setOpenMode(std::fstream::openmode openMode) | Files | |
| setParticleDimensions(unsigned int particleDimensions) | DPMBase | |
| setParticlesWriteVTK(bool writeParticlesVTK) | DPMBase | |
| setRestarted(bool newRestartedFlag) | DPMBase | |
| setRestartVersion(std::string newRV) | DPMBase | |
| setRotation(bool newRotFlag) | DPMBase | |
| setRunNumber(int runNumber) | FilesAndRunNumber | |
| setSaveCount(unsigned int saveCount) | Files | |
| setSystemDimensions(unsigned int newDim) | DPMBase | |
| setTime(Mdouble time) | DPMBase | |
| setTimeMax(Mdouble newTMax) | DPMBase | |
| setTimeStep(Mdouble newDt) | DPMBase | |
| setupInitialConditions() | DPMBase | virtual |
| setWallsWriteVTK(FileType writeWallsVTK) | DPMBase | |
| setXBallsAdditionalArguments(std::string newXBArgs) | DPMBase | |
| setXBallsColourMode(int newCMode) | DPMBase | |
| setXBallsScale(Mdouble newScale) | DPMBase | |
| setXBallsVectorScale(double newVScale) | DPMBase | |
| setXMax(Mdouble newXMax) | DPMBase | |
| setXMin(Mdouble newXMin) | DPMBase | |
| setYMax(Mdouble newYMax) | DPMBase | |
| setYMin(Mdouble newYMin) | DPMBase | |
| setZMax(Mdouble newZMax) | DPMBase | |
| setZMin(Mdouble newZMin) | DPMBase | |
| solve() | DPMBase | |
| solve(int argc, char *argv[]) | DPMBase | |
| speciesHandler | DPMBase | |
| statFile | Files | |
| userHGridCellSize(unsigned int level) | MercuryBase | virtual |
| wallHandler | DPMBase | |
| write(std::ostream &os, bool writeAllParticles=true) const override | MercuryBase | virtual |
| FilesAndRunNumber::write(std::ostream &os) const | FilesAndRunNumber | |
| writeEneHeader(std::ostream &os) const | DPMBase | protectedvirtual |
| writeEneTimestep(std::ostream &os) const | DPMBase | protectedvirtual |
| writeFstatHeader(std::ostream &os) const | DPMBase | protectedvirtual |
| writeOutputFiles() | Mercury3DRestart | inlineprivatevirtual |
| writeRestartFile() | DPMBase | virtual |
| writeVTK() const | DPMBase | protected |
| writeXBallsScript() const | DPMBase | virtual |
| ~DPMBase() | DPMBase | virtual |
| ~Files() | Files | virtual |
| ~FilesAndRunNumber() | FilesAndRunNumber | virtual |
| ~MercuryBase() | MercuryBase | |
1.8.7 
