| actionsAfterSolve() | DPMBase | protectedvirtual |
| actionsAfterTimeStep() | DPMBase | protectedvirtual |
| actionsBeforeTimeLoop() | DPMBase | protectedvirtual |
| actionsBeforeTimeStep() | DPMBase | protectedvirtual |
| actionsOnRestart() | DPMBase | protectedvirtual |
| areInContact(const BaseParticle *pI, const BaseParticle *pJ) const | DPMBase | |
| auto_setdim() | StatisticsVector< T > | protected |
| autoNumber() | FilesAndRunNumber | |
| average(std::vector< StatisticsPoint< T > > &P) | StatisticsVector< T > | |
| boundaryHandler | DPMBase | |
| broadPhase(BaseParticle *i) | DPMBase | protectedvirtual |
| CG_type | StatisticsVector< T > | protected |
| CGPolynomial | StatisticsVector< T > | protected |
| check_current_time_for_statistics() | StatisticsVector< T > | inline |
| checkAndDuplicatePeriodicParticles() | DPMBase | protected |
| checkInteractionWithBoundaries() | DPMBase | protectedvirtual |
| checkParticleForInteraction(const BaseParticle &P) | DPMBase | virtual |
| checkSettings() | DPMBase | |
| closeFiles() | Files | |
| computeAllForces() | DPMBase | protectedvirtual |
| computeExternalForces(BaseParticle *PI) | DPMBase | protectedvirtual |
| computeForcesDueToWalls(BaseParticle *PI) | DPMBase | protectedvirtual |
| computeInternalForces(BaseParticle *i) | DPMBase | protectedvirtual |
| computeInternalForces(BaseParticle *P1, BaseParticle *P2) | DPMBase | protectedvirtual |
| constructor() | StatisticsVector< T > | |
| constructor(std::string name) | StatisticsVector< T > | |
| continueSolve() const | DPMBase | protectedvirtual |
| cutoff | StatisticsVector< T > | protected |
| cutoff2 | StatisticsVector< T > | protected |
| dataFile | Files | |
| doDoublePoints | StatisticsVector< T > | protected |
| doGradient | StatisticsVector< T > | protected |
| doTimeAverage | StatisticsVector< T > | protected |
| doVariance | StatisticsVector< T > | protected |
| DPMBase() | DPMBase | |
| DPMBase(const FilesAndRunNumber &other) | DPMBase | |
| DPMBase(const DPMBase &other) | DPMBase | |
| dx | StatisticsVector< T > | protected |
| dxTimeAverage | StatisticsVector< T > | protected |
| dy | StatisticsVector< T > | protected |
| dyTimeAverage | StatisticsVector< T > | protected |
| dz | StatisticsVector< T > | protected |
| dzTimeAverage | StatisticsVector< T > | protected |
| eneFile | Files | |
| evaluate_force_statistics(int wp=0) | StatisticsVector< T > | |
| evaluate_particle_statistics(std::vector< BaseParticle * >::iterator P, int wp=0) | StatisticsVector< T > | |
| evaluate_wall_force_statistics(Vec3D P, int wp=0) | StatisticsVector< T > | |
| evaluateIntegral(Mdouble n1, Mdouble n2, Mdouble t) | StatisticsVector< T > | inline |
| evaluatePolynomial(Mdouble r) | StatisticsVector< T > | inline |
| evaluatePolynomialGradient(Mdouble r) | StatisticsVector< T > | inline |
| Files() | Files | |
| Files(const Files &other) | Files | |
| FilesAndRunNumber() | FilesAndRunNumber | |
| FilesAndRunNumber(const FilesAndRunNumber &other) | FilesAndRunNumber | |
| findNextExistingDataFile(Mdouble tMin, bool verbose=true) | DPMBase | |
| finishStatistics() | StatisticsVector< T > | virtual |
| format | StatisticsVector< T > | protected |
| fStatFile | Files | |
| gather_force_statistics_from_fstat_and_data() | StatisticsVector< T > | |
| gather_force_statistics_from_p3c(int version) | StatisticsVector< T > | |
| gather_force_statistics_from_p3w(int version, std::vector< int > &index) | StatisticsVector< T > | |
| gatherContactStatistics(unsigned int index1, int index2, Vec3D Contact, Mdouble delta, Mdouble ctheta, Mdouble fdotn, Mdouble fdott, Vec3D P1_P2_normal_, Vec3D P1_P2_tangential) | StatisticsVector< T > | virtual |
| DPMBase::gatherContactStatistics() | DPMBase | protected |
| get2DParametersFromRunNumber(int size_x, int size_y) | FilesAndRunNumber | |
| getAppend() const | DPMBase | |
| getCGPoints() | StatisticsVector< T > | inline |
| getCGShape() | StatisticsVector< T > | inline |
| getCGTimeAveragingInterval() | StatisticsVector< T > | inline |
| getCGTimeMin() | StatisticsVector< T > | inline |
| getCGWidth() | StatisticsVector< T > | inline |
| getCGWidth_over_rmax() | StatisticsVector< T > | inline |
| getCGWidthalls() | StatisticsVector< T > | inline |
| getCGWidthSquared() | StatisticsVector< T > | inline |
| getCutoff() | StatisticsVector< T > | inline |
| getCutoff2() | StatisticsVector< T > | inline |
| getDataFile() | Files | |
| getDataFile() const | Files | |
| getDoCGAlways() const | DPMBase | |
| getDoDoublePoints() | StatisticsVector< T > | inline |
| getDoGradient() | StatisticsVector< T > | inline |
| getDoIgnoreFixedParticles() | StatisticsVector< T > | inline |
| getDoPeriodicWalls() | StatisticsVector< T > | inline |
| getDoTimeAverage() | StatisticsVector< T > | inline |
| getDoVariance() | StatisticsVector< T > | inline |
| getElasticEnergy() const | DPMBase | |
| getEneFile() | Files | |
| getEneFile() const | Files | |
| getFStatFile() | Files | |
| getFStatFile() const | Files | |
| getGravity() const | DPMBase | |
| getHGridUpdateEachTimeStep() const | DPMBase | protectedvirtual |
| getInfo(const BaseParticle &P) const | DPMBase | virtual |
| getKineticEnergy() const | DPMBase | |
| getMirrorAtDomainBoundary() | StatisticsVector< T > | inline |
| getN(int &nx_, int &ny_, int &nz_) | StatisticsVector< T > | inline |
| getName() const | Files | |
| getNTimeAverage() | StatisticsVector< T > | inline |
| getNTimeAverageReset() | StatisticsVector< T > | inline |
| getNtimeSteps() const | DPMBase | |
| getNX() | StatisticsVector< T > | inline |
| getNY() | StatisticsVector< T > | inline |
| getNZ() | StatisticsVector< T > | inline |
| getParticleDimensions() const | DPMBase | |
| getPolynomialName() | StatisticsVector< T > | inline |
| getRestarted() const | DPMBase | |
| getRestartFile() | Files | |
| getRestartFile() const | Files | |
| getRestartVersion() const | DPMBase | |
| getRotation() const | DPMBase | |
| getRunNumber() const | FilesAndRunNumber | |
| getStatFile() | Files | |
| getStatFile() const | Files | |
| getStepSize() const | StatisticsVector< T > | inline |
| getStressTypeForFixedParticles() | StatisticsVector< T > | inline |
| getSuperExact() | StatisticsVector< T > | inline |
| getSystemDimensions() const | DPMBase | |
| getTime() const | DPMBase | |
| getTimeMax() const | DPMBase | |
| getTimeMaxStat() | StatisticsVector< T > | inline |
| getTimeStep() const | DPMBase | |
| getVelocityProfile(Vec3D Position) | StatisticsVector< T > | protected |
| getVerbosityLevel() const | StatisticsVector< T > | inline |
| getXBallsAdditionalArguments() const | DPMBase | |
| getXBallsColourMode() const | DPMBase | |
| getXBallsScale() const | DPMBase | |
| getXBallsVectorScale() const | DPMBase | |
| getXMax() const | DPMBase | |
| getXMaxStat() | StatisticsVector< T > | inline |
| getXMin() const | DPMBase | |
| getXMinStat() | StatisticsVector< T > | inline |
| getYMax() const | DPMBase | |
| getYMaxStat() | StatisticsVector< T > | inline |
| getYMin() const | DPMBase | |
| getYMinStat() | StatisticsVector< T > | inline |
| getZMax() const | DPMBase | |
| getZMaxStat() | StatisticsVector< T > | inline |
| getZMin() const | DPMBase | |
| getZMinStat() | StatisticsVector< T > | inline |
| hGridActionsAfterIntegration() | DPMBase | protectedvirtual |
| hGridActionsBeforeIntegration() | DPMBase | protectedvirtual |
| hGridActionsBeforeTimeLoop() | DPMBase | protectedvirtual |
| hGridActionsBeforeTimeStep() | DPMBase | protectedvirtual |
| hGridInsertParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| hGridRemoveParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| hGridUpdateMove(BaseParticle *, Mdouble) | DPMBase | virtual |
| hGridUpdateParticle(BaseParticle *obj UNUSED) | DPMBase | virtual |
| hmax | StatisticsVector< T > | protected |
| ignoreFixedParticles | StatisticsVector< T > | protected |
| incrementRunNumberInFile() | FilesAndRunNumber | |
| indSpecies | StatisticsVector< T > | protected |
| initialiseStatistics() | StatisticsVector< T > | virtual |
| initialiseTangentialSprings() | DPMBase | protected |
| integrateAfterForceComputation() | DPMBase | protectedvirtual |
| integrateBeforeForceComputation() | DPMBase | protectedvirtual |
| interactionHandler | DPMBase | |
| isMDCLR | StatisticsVector< T > | protected |
| isTimeEqualTo(Mdouble time) const | DPMBase | protected |
| jump_fstat() | StatisticsVector< T > | |
| jump_p3c() | StatisticsVector< T > | |
| launchNewRun(const char *name, bool quick=false) | FilesAndRunNumber | |
| loadPositions(const char *filename) | StatisticsVector< T > | protected |
| loadVelocityProfile(const char *filename) | StatisticsVector< T > | protected |
| mirrorAtDomainBoundary | StatisticsVector< T > | protected |
| nTimeAverage | StatisticsVector< T > | protected |
| nTimeAverageReset | StatisticsVector< T > | protected |
| nx | StatisticsVector< T > | protected |
| nxMirrored | StatisticsVector< T > | protected |
| ny | StatisticsVector< T > | protected |
| nyMirrored | StatisticsVector< T > | protected |
| nz | StatisticsVector< T > | protected |
| nzMirrored | StatisticsVector< T > | protected |
| openFiles() | Files | |
| outputInteractionDetails() const | DPMBase | protected |
| outputStatistics() | StatisticsVector< T > | virtual |
| outputXBallsData(std::ostream &os) const | DPMBase | protectedvirtual |
| outputXBallsDataParticle(const unsigned int i, const unsigned int format, std::ostream &os) const | DPMBase | protectedvirtual |
| P1 | StatisticsVector< T > | protected |
| P1_P2_CollisionalHeatFlux | StatisticsVector< T > | protected |
| P1_P2_Contact | StatisticsVector< T > | protected |
| P1_P2_ContactCoupleStress | StatisticsVector< T > | protected |
| P1_P2_Dissipation | StatisticsVector< T > | protected |
| P1_P2_distance | StatisticsVector< T > | protected |
| P1_P2_Fabric | StatisticsVector< T > | protected |
| P1_P2_normal | StatisticsVector< T > | protected |
| P1_P2_NormalStress | StatisticsVector< T > | protected |
| P1_P2_NormalTraction | StatisticsVector< T > | protected |
| P1_P2_Potential | StatisticsVector< T > | protected |
| P1_P2_TangentialStress | StatisticsVector< T > | protected |
| P1_P2_TangentialTraction | StatisticsVector< T > | protected |
| P2 | StatisticsVector< T > | protected |
| p3c_file | StatisticsVector< T > | protected |
| p3p_file | StatisticsVector< T > | protected |
| p3w_file | StatisticsVector< T > | protected |
| particleHandler | DPMBase | |
| periodicWalls | StatisticsVector< T > | protected |
| Points | StatisticsVector< T > | protected |
| positions_ | StatisticsVector< T > | protected |
| print_CG() | StatisticsVector< T > | |
| print_help() | StatisticsVector< T > | |
| printStat() | StatisticsVector< T > | |
| printTime() const | DPMBase | protectedvirtual |
| processStatistics(bool usethese) | StatisticsVector< T > | virtual |
| random | DPMBase | |
| read(std::istream &is) | DPMBase | virtual |
| read_next_from_p3p_file() | StatisticsVector< T > | protected |
| readArguments(int argc, char *argv[]) | DPMBase | |
| readDataFile(const std::string fileName, unsigned int format=0) | DPMBase | |
| readNextArgument(int &i, int argc, char *argv[]) | DPMBase | virtual |
| readNextDataFile(unsigned int format) | StatisticsVector< T > | |
| readOld(std::istream &is) | DPMBase | virtual |
| readParAndIniFiles(const std::string fileName) | DPMBase | |
| readRestartFile() | DPMBase | |
| readRestartFile(std::string fileName) | DPMBase | |
| readRunNumberFromFile() | FilesAndRunNumber | |
| readStatArguments(int argc, char *argv[]) | StatisticsVector< T > | |
| removeDuplicatePeriodicParticles() | DPMBase | protected |
| reset_statistics() | StatisticsVector< T > | virtual |
| resetFileCounter() | Files | |
| restartFile | Files | |
| rmax | StatisticsVector< T > | protected |
| rmin | StatisticsVector< T > | protected |
| satisfiesInclusionCriteria(BaseParticle *P) | StatisticsVector< T > | protected |
| set_h(Mdouble h) | StatisticsVector< T > | inline |
| set_hmax(Mdouble new_) | StatisticsVector< T > | inline |
| set_hx(Mdouble hx) | StatisticsVector< T > | inline |
| set_hy(Mdouble hy) | StatisticsVector< T > | inline |
| set_hz(Mdouble hz) | StatisticsVector< T > | inline |
| set_infiniteStressForFixedParticles(bool new_) | StatisticsVector< T > | inline |
| set_Polynomial(std::vector< Mdouble > new_coefficients, unsigned int new_dim) | StatisticsVector< T > | inline |
| set_Polynomial(Mdouble *new_coefficients, unsigned int num_coeff, unsigned int new_dim) | StatisticsVector< T > | inline |
| set_rmax(Mdouble new_) | StatisticsVector< T > | inline |
| set_rmin(Mdouble new_) | StatisticsVector< T > | inline |
| set_statType() | StatisticsVector< T > | |
| setAppend(bool newAppendFlag) | DPMBase | |
| setCGShape(const char *new_) | StatisticsVector< T > | |
| setCGShape(CG new_) | StatisticsVector< T > | |
| setCGTimeAveragingInterval(Mdouble t) | StatisticsVector< T > | inline |
| setCGTimeMin(Mdouble t) | StatisticsVector< T > | inline |
| setCGWidth(Mdouble w) | StatisticsVector< T > | inline |
| setCGWidth2(Mdouble new_) | StatisticsVector< T > | |
| setCGWidth_over_rmax(Mdouble new_) | StatisticsVector< T > | inline |
| setCGWidthalls(bool new_) | StatisticsVector< T > | inline |
| setDimension(unsigned int newDim) | DPMBase | |
| setDoCGAlways(bool newDoCGFlag) | DPMBase | |
| setDoDoublePoints(bool new_) | StatisticsVector< T > | inline |
| setDoGradient(bool new_) | StatisticsVector< T > | inline |
| setDoIgnoreFixedParticles(bool new_) | StatisticsVector< T > | inline |
| setDoPeriodicWalls(bool new_) | StatisticsVector< T > | inline |
| setDoTimeAverage(bool new_) | StatisticsVector< T > | inline |
| setDoVariance(bool new_) | StatisticsVector< T > | inline |
| setFileType(FileType fileType) | Files | |
| setFixedParticles(unsigned int n) | DPMBase | protected |
| setGravity(Vec3D newGravity) | DPMBase | |
| setInfinitelyLongDistance() | StatisticsVector< T > | |
| setMirrorAtDomainBoundary(Mdouble new_) | StatisticsVector< T > | inline |
| setN(int n) | StatisticsVector< T > | inline |
| setN(int nx_, int ny_, int nz_) | StatisticsVector< T > | inline |
| setName(const std::string &name) | Files | |
| setName(const char *name) | Files | |
| setNextSavedTimeStep(unsigned int nextSavedTimeStep) | Files | |
| setNTimeAverageReset(int new_) | StatisticsVector< T > | inline |
| setNX(int new_) | StatisticsVector< T > | inline |
| setNY(int new_) | StatisticsVector< T > | inline |
| setNZ(int new_) | StatisticsVector< T > | inline |
| setOpenMode(std::fstream::openmode openMode) | Files | |
| setParticleDimensions(unsigned int particleDimensions) | DPMBase | |
| setPolynomialName(const char *new_name) | StatisticsVector< T > | inline |
| setPositions() | StatisticsVector< T > | |
| setRestarted(bool newRestartedFlag) | DPMBase | |
| setRestartVersion(std::string newRV) | DPMBase | |
| setRotation(bool newRotFlag) | DPMBase | |
| setRunNumber(int runNumber) | FilesAndRunNumber | |
| setSaveCount(unsigned int saveCount) | Files | |
| setStepSize(unsigned int stepSize) | StatisticsVector< T > | inline |
| setStressTypeForFixedParticles(int new_) | StatisticsVector< T > | inline |
| setSuperExact(bool new_) | StatisticsVector< T > | inline |
| setSystemDimensions(unsigned int newDim) | DPMBase | |
| setTime(Mdouble time) | DPMBase | |
| setTimeMax(Mdouble newTMax) | DPMBase | |
| setTimeMaxStat(Mdouble t) | StatisticsVector< T > | inline |
| setTimeStep(Mdouble newDt) | DPMBase | |
| setupInitialConditions() | DPMBase | virtual |
| setVerbosityLevel(int new_) | StatisticsVector< T > | inline |
| setXBallsAdditionalArguments(std::string newXBArgs) | DPMBase | |
| setXBallsColourMode(int newCMode) | DPMBase | |
| setXBallsScale(Mdouble newScale) | DPMBase | |
| setXBallsVectorScale(double newVScale) | DPMBase | |
| setXMax(Mdouble newXMax) | DPMBase | |
| setXMaxStat(Mdouble xmaxStat_) | StatisticsVector< T > | inline |
| setXMin(Mdouble newXMin) | DPMBase | |
| setXMinStat(Mdouble xminStat_) | StatisticsVector< T > | inline |
| setYMax(Mdouble newYMax) | DPMBase | |
| setYMaxStat(Mdouble ymaxStat_) | StatisticsVector< T > | inline |
| setYMin(Mdouble newYMin) | DPMBase | |
| setYMinStat(Mdouble yminStat_) | StatisticsVector< T > | inline |
| setZMax(Mdouble newZMax) | DPMBase | |
| setZMaxStat(Mdouble zmaxStat_) | StatisticsVector< T > | inline |
| setZMin(Mdouble newZMin) | DPMBase | |
| setZMinStat(Mdouble zminStat_) | StatisticsVector< T > | inline |
| solve() | DPMBase | |
| solve(int argc, char *argv[]) | DPMBase | |
| speciesHandler | DPMBase | |
| statFile | Files | |
| statistics_from_fstat_and_data() | StatisticsVector< T > | |
| statistics_from_p3() | StatisticsVector< T > | |
| StatisticsVector() | StatisticsVector< T > | inline |
| StatisticsVector(std::string name) | StatisticsVector< T > | inline |
| StatisticsVector(StatisticsVector &other) | StatisticsVector< T > | |
| StatisticsVector(int argc, char *argv[]) | StatisticsVector< T > | |
| statType | StatisticsVector< T > | protected |
| stepSize_ | StatisticsVector< T > | protected |
| StressTypeForFixedParticles | StatisticsVector< T > | protected |
| superexact | StatisticsVector< T > | protected |
| timeAverage | StatisticsVector< T > | protected |
| timeVariance | StatisticsVector< T > | protected |
| tintStat | StatisticsVector< T > | protected |
| tmaxStat | StatisticsVector< T > | protected |
| tminStat | StatisticsVector< T > | protected |
| VelocityProfile | StatisticsVector< T > | protected |
| VelocityProfile_D | StatisticsVector< T > | protected |
| VelocityProfile_Min | StatisticsVector< T > | protected |
| verbose() | StatisticsVector< T > | inline |
| verbosity | StatisticsVector< T > | protected |
| w2 | StatisticsVector< T > | protected |
| w_over_rmax | StatisticsVector< T > | protected |
| wallHandler | DPMBase | |
| walls | StatisticsVector< T > | protected |
| write(std::ostream &os, bool writeAllParticles=true) const | DPMBase | virtual |
| FilesAndRunNumber::write(std::ostream &os) const | FilesAndRunNumber | |
| write_statistics() | StatisticsVector< T > | |
| write_time_average_statistics() | StatisticsVector< T > | |
| writeEneHeader(std::ostream &os) const | DPMBase | protectedvirtual |
| writeEneTimestep(std::ostream &os) const | DPMBase | protectedvirtual |
| writeFstatHeader(std::ostream &os) const | DPMBase | protectedvirtual |
| writeOutputFiles() | StatisticsVector< T > | virtual |
| writeRestartFile() | DPMBase | virtual |
| writeXBallsScript() const | DPMBase | virtual |
| xmaxStat | StatisticsVector< T > | protected |
| xminStat | StatisticsVector< T > | protected |
| ymaxStat | StatisticsVector< T > | protected |
| yminStat | StatisticsVector< T > | protected |
| zmaxStat | StatisticsVector< T > | protected |
| zminStat | StatisticsVector< T > | protected |
| ~DPMBase() | DPMBase | virtual |
| ~Files() | Files | virtual |
| ~FilesAndRunNumber() | FilesAndRunNumber | virtual |
1.8.7 
