Container to store all BaseParticle. More...

#include <ParticleHandler.h>

Inheritance diagram for ParticleHandler:

Public Member Functions
	ParticleHandler ()
	Default constructor, it creates an empty ParticleHandler. More...

	ParticleHandler (const ParticleHandler &PH)
	Constructor that copies all BaseParticle it contains and then sets the smallest and largest particle. More...

ParticleHandler &	operator= (const ParticleHandler &rhs)
	Assignment operator. More...

	~ParticleHandler () override
	Destructor, it destructs the ParticleHandler and all BaseParticle it contains. More...

void	addExistingObject (BaseParticle *P) override
	Adds a BaseParticle to the ParticleHandler. More...

void	addObject (BaseParticle *P) override
	Adds a BaseParticle to the ParticleHandler. More...

void	addObject (int fromProcessor, BaseParticle *P)
	Adds a BaseParticle located at processor fromProcessor to toProcessor. More...

void	addGhostObject (int fromPrcessor, int toProcessor, BaseParticle *p)
	Adds a ghost particle located at fromProcessor to toProcessor. More...

void	addGhostObject (BaseParticle *P) override
	Adds a BaseParticle to the ParticleHandler. More...

void	removeObject (unsigned int index) override
	Removes a BaseParticle from the ParticleHandler. More...

void	removeGhostObject (unsigned int index)
	Removes a BaseParticle from the ParticleHandler without a global check, this is only to be done for mpi routines. More...

void	removeLastObject ()
	Removes the last BaseParticle from the ParticleHandler. More...

void	computeSmallestParticle ()
	Computes the smallest particle (by interaction radius) and sets it in smallestParticle_. More...

void	computeLargestParticle ()
	Computes the largest particle (by interaction radius) and sets it in largestParticle_. More...

BaseParticle *	getSmallestParticleLocal () const
	Gets a pointer to the smallest BaseParticle (by interactionRadius) in this ParticleHandler of the local domain. More...

BaseParticle *	getSmallestParticle () const
	Gets a pointer to the smallest BaseParticle (by interactionRadius) in this ParticleHandler of the local domain. When mercury is running in parallel this function throws an error since a pointer to another domain is useless. More...

BaseParticle *	getLargestParticleLocal () const
	Gets a pointer to the largest BaseParticle (by interactionRadius) in the ParticleHandler of the local domain. More...

BaseParticle *	getLargestParticle () const
	Returns the pointer of the largest particle in the particle handler. When mercury is running in parallel this function throws an error since a pointer to another domain is useless. More...

Mdouble	getSmallestInteractionRadiusLocal () const
	Returns the smallest interaction radius of the current domain. More...

Mdouble	getSmallestInteractionRadius () const
	Returns the smallest interaction radius. More...

Mdouble	getLargestInteractionRadiusLocal () const
	Returns the largest interaction radius of the current domain. More...

Mdouble	getLargestInteractionRadius () const
	Returns the largest interaction radius. More...

BaseParticle *	getFastestParticleLocal () const
	Gets a pointer to the fastest BaseParticle in this ParticleHandler. More...

BaseParticle *	getFastestParticle () const

Mdouble	getKineticEnergy () const

Mdouble	getRotationalEnergy () const

Mdouble	getMass () const

Vec3D	getMassTimesPosition () const

Vec3D	getCentreOfMass () const

Vec3D	getMomentum () const

Vec3D	getAngularMomentum () const

Mdouble	getVolume () const

Mdouble	getMeanRadius () const

BaseParticle *	getLowestPositionComponentParticleLocal (int i) const
	Gets a pointer to the particle with the lowest coordinates in direction i in this ParticleHandler. More...

BaseParticle *	getLowestPositionComponentParticle (int i) const
	Gets a pointer to the particle with the lowest coordinates in direction i in this ParticleHandler. More...

BaseParticle *	getHighestPositionComponentParticleLocal (int i) const
	Gets a pointer to the particle with the highest coordinates in direction i in this ParticleHandler. More...

BaseParticle *	getHighestPositionComponentParticle (int i) const
	Gets a pointer to the particle with the highest coordinates in direction i in this ParticleHandler. More...

BaseParticle *	getLowestVelocityComponentParticleLocal (int i) const
	Gets a pointer to the particle with the lowest velocity in direction i in this ParticleHandler. More...

BaseParticle *	getLowestVelocityComponentParticle (int i) const
	Gets a pointer to the particle with the lowest velocity in direction i in this ParticleHandler. More...

BaseParticle *	getHighestVelocityComponentParticleLocal (int i) const
	Gets a pointer to the particle with the highest velocity in direction i in this ParticleHandler. More...

BaseParticle *	getHighestVelocityComponentParticle (int i) const
	Gets a pointer to the particle with the highest velocity in direction i in this ParticleHandler. More...

template<typename T >
std::enable_if< std::is_scalar < T >::value, T >::type	getParticleAttributeLocal (std::function< T(BaseParticle *)> attribute, AttributeType type) const
	Computes an attribute type (min/max/..) of a particle attribute (position/velocity) in a local domain. More...

template<typename T >
std::enable_if< std::is_scalar < T >::value, T >::type	getParticleAttribute (std::function< T(BaseParticle *)> attribute, AttributeType type) const
	Computes an attribute type (min/max/..) of a particle attribute(position/velocity) in the global domain. More...

Mdouble	getHighestPositionX () const
	Function returns the highest position in the x-direction. More...

void	clear () override
	Empties the whole ParticleHandler by removing all BaseParticle. More...

unsigned int	getNumberOfFixedParticles () const
	Gets the number of particles that are fixed. More...

unsigned int	getNumberOfUnfixedParticles () const
	Gets the number of particles that are not fixed. More...

BaseParticle *	readAndCreateObject (std::istream &is)
	Create a new particle, based on the information provided in a restart file. More...

void	readAndAddObject (std::istream &is) override
	Create a new particle, based on the information from old-style restart data. More...

void	write (std::ostream &os) const

void	checkExtrema (BaseParticle *P)
	Checks if the extrema of this ParticleHandler needs updating. More...

void	checkExtremaOnDelete (BaseParticle *P)
	Checks if the extrema of this ParticleHandler needs updating when a particle is deleted. More...

void	computeAllMasses (unsigned int indSpecies)
	Computes the mass for all BaseParticle of the given species in this ParticleHandler. More...

void	computeAllMasses ()
	Computes the mass for all BaseParticle in this ParticleHandler. More...

void	addedFixedParticle ()
	Increment of the number of fixed particles. More...

void	removedFixedParticle ()
	Decrement of the number of fixed particles. More...

std::string	getName () const override
	Returns the name of the handler, namely the string "ParticleHandler". More...

unsigned int	getNumberOfRealObjects () const
	Returns the number of real objects (on all processors) More...

unsigned int	getNumberOfObjects () const override
	Returns the number of objects in the container. In parallel code this practice is forbidden to avoid confusion with real and fake particles. If the size of the container is wished, call size() More...

unsigned int	getNumberOfFixedObjectsLocal () const
	Computes the number of Fixed particles on a local domain. More...

unsigned int	getNumberOfFixedObjects () const
	Computes the number of fixed particles in the whole simulation. More...

unsigned int	getNumberOfRealObjectsLocal () const
	Returns the number of real objects on a local domain. MPI particles and periodic particles are neglected. More...

void	actionsAfterTimeStep ()

double	getLiquidFilmVolume () const

Public Member Functions inherited from BaseHandler< BaseParticle >
	BaseHandler ()
	Default BaseHandler constructor, it creates an empty BaseHandler and assigns DPMBase_ to a null pointer. More...

	BaseHandler (const BaseHandler< BaseParticle > &BH)
	Constructor that copies the objects of the given handler into itself and sets other variables to 0/nullptr. More...

virtual	~BaseHandler ()
	Destructor, it destructs the BaseHandler and all Object it contains. More...

void	copyContentsFromOtherHandler (const BaseHandler< BaseParticle > &BH)
	Function that copies the contents (vector of pointers, maxObject_, nextId_, DPMBase_) from one handler (container) to the other. More...

std::enable_if <!std::is_pointer< U >::value, U * >::type	copyAndAddObject (const U &object)
	Creates a copy of a Object and adds it to the BaseHandler. More...

std::enable_if < std::is_pointer< U >::value, U >::type	copyAndAddObject (const U object)
	Creates a copy of a Object and adds it to the BaseHandler. More...

std::enable_if <!std::is_pointer< U >::value, U * >::type	copyAndAddGhostObject (const U &object)
	Creates a copy of a Object and adds it to the BaseHandler. This is one locally for inserting mpi particles, they avoid the global check if the particle can actually be inserted, because the mpi domain already knows that is the case. More...

std::enable_if < std::is_pointer< U >::value, U >::type	copyAndAddGhostObject (const U object)
	Creates a copy of a Object and adds it to the BaseHandler. This is one locally for inserting mpi particles, they avoid the global check if the particle can actually be inserted, because the mpi domain already knows that is the case. More...

void	removeIf (const std::function< bool(BaseParticle *)> cond)

virtual void	removeObject (unsigned const int index)
	Removes an Object from the BaseHandler. More...

void	removeLastObject ()
	Removes the last Object from the BaseHandler. More...

void	read (std::istream &is)
	Reads all objects from restart data. More...

BaseParticle *	getObjectById (const unsigned int id)
	Gets a pointer to the Object at the specified index in the BaseHandler. More...

std::vector< BaseParticle * >	getObjectsById (const unsigned int id)
	Gets a vector of pointers to the objects with the specific id. More...

BaseParticle *	getObject (const unsigned int id)
	Gets a pointer to the Object at the specified index in the BaseHandler. More...

const BaseParticle *	getObject (const unsigned int id) const
	Gets a constant pointer to the Object at the specified index in the BaseHandler. More...

BaseParticle *	getLastObject ()
	Gets a pointer to the last Object in this BaseHandler. More...

const BaseParticle *	getLastObject () const
	Gets a constant pointer to the last Object in this BaseHandler. More...

unsigned int	getSize () const
	Gets the size of the particleHandler (including mpi and periodic particles) More...

unsigned int	getStorageCapacity () const
	Gets the storage capacity of this BaseHandler. More...

void	setStorageCapacity (const unsigned int N)
	Sets the storage capacity of this BaseHandler. More...

void	resize (const unsigned int N, const BaseParticle &obj)
	Resizes the container to contain N elements. More...

const std::vector < BaseParticle * > ::const_iterator	begin () const
	Gets the begin of the const_iterator over all Object in this BaseHandler. More...

const std::vector < BaseParticle * >::iterator	begin ()
	Gets the begin of the iterator over all BaseBoundary in this BaseHandler. More...

const std::vector < BaseParticle * > ::const_iterator	end () const
	Gets the end of the const_iterator over all BaseBoundary in this BaseHandler. More...

const std::vector < BaseParticle * >::iterator	end ()
	Gets the end of the iterator over all BaseBoundary in this BaseHandler. More...

void	setDPMBase (DPMBase *DPMBase)
	Sets the problem that is solved using this handler. More...

void	setId (BaseParticle *object, unsigned int id)
	This function sets the id and ensures that nextId is a bigger value than id. More...

void	increaseId ()

unsigned int	getNextId ()

void	setNextId (unsigned int id)

DPMBase *	getDPMBase ()
	Gets the problem that is solved using this handler. More...

DPMBase *	getDPMBase () const
	Gets the problem that is solved using this handler and does not change the class. More...

virtual void	writeVTK () const
	now empty function for writing VTK files. More...

unsigned	getNextGroupId ()
	Should be called each time you assign a groupId. Returns the value of nextGroupId_ and increases nextGroupId_ by one. More...

Static Public Member Functions
static BaseParticle *	createObject (const std::string &type)
	Reads BaseParticle into the ParticleHandler from restart data. More...

Private Member Functions
Mdouble	getKineticEnergyLocal () const

Mdouble	getRotationalEnergyLocal () const

Mdouble	getMassLocal () const

Mdouble	getVolumeLocal () const

Vec3D	getMassTimesPositionLocal () const

Mdouble	getSumRadiusLocal () const

Private Attributes
BaseParticle *	largestParticle_
	A pointer to the largest BaseParticle (by interactionRadius) in this ParticleHandler. More...

BaseParticle *	smallestParticle_
	A pointer to the smallest BaseParticle (by interactionRadius) in this ParticleHandler. More...

unsigned int	NFixedParticles_
	Number of fixed particles. More...

Additional Inherited Members
Protected Attributes inherited from BaseHandler< BaseParticle >
std::vector< BaseParticle * >	objects_
	The actual list of Object pointers. More...

Detailed Description

Container to store all BaseParticle.

The ParticleHandler is a container to store all BaseParticle. It is implemented by a vector of pointers to BaseParticle.

Definition at line 47 of file ParticleHandler.h.

Constructor & Destructor Documentation

ParticleHandler::ParticleHandler ( )

Default constructor, it creates an empty ParticleHandler.

Constructor of the ParticleHandler class. It creates and empty ParticleHandler.

Definition at line 48 of file ParticleHandler.cc.

References DEBUG, largestParticle_, logger, and smallestParticle_.

 {
     largestParticle_ = nullptr;
     smallestParticle_ = nullptr;
     logger(DEBUG, "ParticleHandler::ParticleHandler() finished");
 }

ParticleHandler::ParticleHandler ( const ParticleHandler & PH )

Constructor that copies all BaseParticle it contains and then sets the smallest and largest particle.

Parameters

[in] PH The ParticleHandler that has to be copied.

This is not a copy constructor! It copies the DPMBase and all BaseParticle, and sets the other variables to 0. After that, it computes the smallest and largest particle in this handler.

Definition at line 61 of file ParticleHandler.cc.

References clear(), computeLargestParticle(), computeSmallestParticle(), BaseHandler< BaseParticle >::copyContentsFromOtherHandler(), DEBUG, BaseHandler< T >::getDPMBase(), largestParticle_, logger, BaseHandler< BaseParticle >::objects_, BaseHandler< BaseParticle >::setDPMBase(), and smallestParticle_.

         : BaseHandler<BaseParticle>()
 {
     clear();
     setDPMBase(PH.getDPMBase());
     largestParticle_ = nullptr;
     smallestParticle_ = nullptr;
     copyContentsFromOtherHandler(PH);
     if (!objects_.empty())
     {
         computeLargestParticle();
         computeSmallestParticle();
     }
     logger(DEBUG, "ParticleHandler::ParticleHandler(const ParticleHandler &PH) finished");
 }

ParticleHandler::~ParticleHandler ( )

override

Destructor, it destructs the ParticleHandler and all BaseParticle it contains.

Set the pointers to largestParticle_ and smallestParticle_ to nullptr, all BaseParticle are destroyed by the BaseHandler afterwards.

Definition at line 105 of file ParticleHandler.cc.

References DEBUG, largestParticle_, logger, and smallestParticle_.

 {
     //First reset the pointers, such that they are not checked twice when removing particles
     largestParticle_ = nullptr;
     smallestParticle_ = nullptr;
     logger(DEBUG, "ParticleHandler::~ParticleHandler() finished");
 }

Member Function Documentation

void ParticleHandler::actionsAfterTimeStep ( )

Definition at line 1340 of file ParticleHandler.cc.

References constants::i.

Referenced by DPMBase::computeOneTimeStep().

 {
     for (auto i: *this)
     {
         i->actionsAfterTimeStep();
     }
 }

void ParticleHandler::addedFixedParticle ( )

Increment of the number of fixed particles.

Todo:: MX: For Jonny, is this still required, keeping the parallel code in mind?

Definition at line 1202 of file ParticleHandler.cc.

References NFixedParticles_.

Referenced by BaseParticle::fixParticle().

 {
     NFixedParticles_++;
 }

void ParticleHandler::addExistingObject ( BaseParticle * P )

overridevirtual

Adds a BaseParticle to the ParticleHandler.

Parameters

[in] P A pointer to the BaseParticle that has to be added.

To add a BaseParticle to the ParticleHandler, first check if it has a species, since it is as common bug to use a BaseParticle without species, which leads to a segmentation fault. To help the user with debugging, a warning is given if a particle without species is added. After that, the actions for adding the particle to the BaseHandler are taken, which include adding it to the vector of pointers to all BaseParticle and assigning the correct id and index. Then the particle is added to the HGrid, the particle is told that this is its handler, its mass is computed and finally it is checked if this is the smallest or largest particle in this ParticleHandler. The particle exists, in other words: it has been made before. This implies it already got an id Attached to it and hence we don't want to assign a new ID to it.

Reimplemented from BaseHandler< BaseParticle >.

Definition at line 129 of file ParticleHandler.cc.

References BaseHandler< T >::addExistingObject(), checkExtrema(), ParticleSpecies::computeMass(), BaseHandler< BaseParticle >::getDPMBase(), BaseObject::getId(), BaseInteractable::getSpecies(), DPMBase::hGridInsertParticle(), DPMBase::hGridUpdateParticle(), logger, BaseParticle::setHandler(), and WARN.

Referenced by readAndAddObject().

 {
     if (P->getSpecies() == nullptr)
     {
         logger(WARN, "WARNING: The particle with ID % that is added in "
                      "ParticleHandler::addObject does not have a species yet."
                      "Please make sure that you have "
                      "set the species somewhere in the driver code.", P->getId());
     }
     
     //Puts the particle in the Particle list
     BaseHandler<BaseParticle>::addExistingObject(P);
     if (getDPMBase() != nullptr)
     {
         //This places the particle in this grid
         getDPMBase()->hGridInsertParticle(P);
         //This computes where the particle currently is in the grid
         getDPMBase()->hGridUpdateParticle(P);
     }
     //set the particleHandler pointer
     P->setHandler(this);
     //compute mass of the particle
     P->getSpecies()->computeMass(P);
     //Check if this particle has new extrema
     checkExtrema(P);
 }

void ParticleHandler::addGhostObject	(	int	fromProcessor,
		int	toProcessor,
		BaseParticle *	p
	)

Adds a ghost particle located at fromProcessor to toProcessor.

This function adds a ghost particle from one processor to another processor.

When a periodic ghost particle or a mpi ghost particle is created, the ID should not be updated and hence the addGhostObject needs to be called. Adding a ghost keeps the ID constant. Additionally this function copies the particle information given on processor fromProcessor to all other processors. The target processor then adds the particle.

Parameters

[in]	fromProcessor	processor containing the particle data
[in]	toProcessor	processor that needs to add the particle
[in,out]	particle	that contains the data and receives the data

Definition at line 280 of file ParticleHandler.cc.

References copyDataFromMPIParticleToParticle(), MPISphericalParticle::copyDataFromParticleToMPIParticle(), MPIContainer::getProcessorID(), MPIContainer::Instance(), logger, MAX_PROC, PARTICLE, PARTICLE_DATA, MPIContainer::receive(), MPIContainer::send(), MPIContainer::sync(), and WARN.

Referenced by PeriodicBoundaryHandler::processLocalGhostParticles(), Domain::processReceivedBoundaryParticleData(), and PeriodicBoundaryHandler::processReceivedGhostParticleData().

 {
 #ifdef MERCURY_USE_MPI
     MPIContainer& communicator = MPIContainer::Instance();
     if (fromProcessor == toProcessor)
     {
         if (communicator.getProcessorID() == fromProcessor)
         {
             addGhostObject(p);
         }
 
         return;
     }
 
     //Create communication information object
     MPIParticle pInfo;
     int tag;
     if (communicator.getProcessorID() == fromProcessor)
     {
         pInfo.copyDataFromParticleToMPIParticle(p);
         tag = fromProcessor*MAX_PROC*10 + toProcessor*10 + MercuryMPITag::PARTICLE_DATA;
         communicator.send(&pInfo, MercuryMPIType::PARTICLE, 1, toProcessor, tag);
     }
 
     if (communicator.getProcessorID() == toProcessor)
     {
         tag = fromProcessor*MAX_PROC*10 + toProcessor*10 + MercuryMPITag::PARTICLE_DATA;
         communicator.receive(&pInfo, MercuryMPIType::PARTICLE, 1, fromProcessor, tag);
     }
 
     //Sync the communication
     communicator.sync();
 
     //Add the data to the new particle
     if (communicator.getProcessorID() == toProcessor)
     {
         copyDataFromMPIParticleToParticle(&pInfo, p, this);
     }
 
 
     //Only toProcessor adds the particle, quietly without any check with other processors
     //IMPORTANT NOTE: When adding  a periodic particle in parallel, this is performed just before
     //finding new particles. For that reason we dont have to add a ghostparticle to the mpi communication lists
     if (communicator.getProcessorID() == toProcessor)
     {
         addGhostObject(p);
     }
 #else
     logger(WARN,
            "Function addGhostObject(int fromProcessor, int toProcessor, BaseParticle* p) should not be used in serial code");
 #endif
 }

void ParticleHandler::addGhostObject ( BaseParticle * P )

overridevirtual

Adds a BaseParticle to the ParticleHandler.

This is a special function that is used in the parallel code. The functions differs from the standard parallel implementation as this function does not check if the particle is an mpi particle and the mpi domain is not updated. When the domain adds mpi particles to the simulation these checks are not required. It also doesnt increase the id of the particle

Parameters

[in] A pointer to the BaseParticle that has to be added.

Reimplemented from BaseHandler< BaseParticle >.

Definition at line 341 of file ParticleHandler.cc.

References BaseHandler< T >::addGhostObject(), checkExtrema(), ParticleSpecies::computeMass(), BaseHandler< BaseParticle >::getDPMBase(), BaseObject::getId(), BaseInteractable::getSpecies(), DPMBase::hGridInsertParticle(), DPMBase::hGridUpdateParticle(), INFO, MPIContainer::Instance(), logger, BaseParticle::setHandler(), and WARN.

 {
 #ifdef MERCURY_USE_MPI
     if (P->getSpecies() == nullptr)
     {
         logger(WARN, "[ParticleHandler::adGhostObject(BaseParticle*)] "
                 "WARNING: The particle with ID % that is added in "
                 "ParticleHandler::addObject does not have a species yet."
                 "Please make sure that you have "
                 "set the species somewhere in the driver code.", P->getId());
     }
 
     MPIContainer& communicator = MPIContainer::Instance();
     //Puts the particle in the Particle list
     BaseHandler<BaseParticle>::addGhostObject(P);
     if (getDPMBase() != nullptr)
     {
         //This places the particle in this grid
         getDPMBase()->hGridInsertParticle(P);
         //This computes where the particle currently is in the grid
         getDPMBase()->hGridUpdateParticle(P);
     }
     //set the particleHandler pointer
     P->setHandler(this);
     //compute mass of the particle
     P->getSpecies()->computeMass(P) ;
     //Check if this particle has new extrema
     checkExtrema(P);
 #else
     logger(INFO,
            "Function ParticleHandler::mpiAddObject(BaseParticle* P) should only be called when compiling with parallel build on");
 #endif
 }

void ParticleHandler::addObject ( BaseParticle * P )

overridevirtual

Adds a BaseParticle to the ParticleHandler.

Parameters

[in] P A pointer to the BaseParticle that has to be added.

To add a BaseParticle to the ParticleHandler, first check if it has a species, since it is as common bug to use a BaseParticle without species, which leads to a segmentation fault. To help the user with debugging, a warning is given if a particle without species is added. After that, the actions for adding the particle to the BaseHandler are taken, which include adding it to the vector of pointers to all BaseParticle and assigning the correct id and index. Then the particle is added to the HGrid, the particle is told that this is its handler, its mass is computed and finally it is checked if this is the smallest or largest particle in this ParticleHandler.

Reimplemented from BaseHandler< BaseParticle >.

Definition at line 170 of file ParticleHandler.cc.

References BaseHandler< T >::addObject(), checkExtrema(), ParticleSpecies::computeMass(), BaseHandler< BaseParticle >::getDPMBase(), BaseObject::getId(), BaseInteractable::getSpecies(), DPMBase::hGridInsertParticle(), DPMBase::hGridUpdateParticle(), BaseHandler< T >::increaseId(), DPMBase::insertGhostParticle(), BaseParticle::isMPIParticle(), BaseParticle::isPeriodicGhostParticle(), BaseParticle::isSphericalParticle(), logger, DPMBase::mpiInsertParticleCheck(), NUMBER_OF_PROCESSORS, BaseParticle::setHandler(), BaseParticle::setPeriodicComplexity(), DPMBase::setRotation(), DPMBase::updateGhostGrid(), and WARN.

Referenced by addObject(), CircularPeriodicBoundary::checkBoundaryAfterParticleMoved(), SubcriticalMaserBoundaryTEST::checkBoundaryAfterParticleMoved(), SubcriticalMaserBoundary::checkBoundaryAfterParticleMoved(), ConstantMassFlowMaserBoundary::checkBoundaryAfterParticleMoved(), SubcriticalMaserBoundaryTEST::copyExtraParticles(), PeriodicBoundary::createGhostParticle(), ShearBoxBoundary::createHorizontalPeriodicParticles(), LeesEdwardsBoundary::createHorizontalPeriodicParticles(), CircularPeriodicBoundary::createPeriodicParticle(), SubcriticalMaserBoundary::createPeriodicParticle(), AngledPeriodicBoundary::createPeriodicParticle(), ConstantMassFlowMaserBoundary::createPeriodicParticle(), ShearBoxBoundary::createVerticalPeriodicParticles(), LeesEdwardsBoundary::createVerticalPeriodicParticles(), and SubcriticalMaserBoundaryTEST::extendBottom().

 {
     if (P->getSpecies() == nullptr)
     {
         logger(WARN, "WARNING: The particle with ID % that is added in "
                      "ParticleHandler::addObject does not have a species yet."
                      "Please make sure that you have "
                      "set the species somewhere in the driver code.", P->getId());
     }
 #ifdef MERCURY_USE_MPI
     bool insertParticle;
     //Check if the particle P should be added to the current domain
     if (NUMBER_OF_PROCESSORS == 1)
     {
         insertParticle = true;
     }
     else
     {
         insertParticle  = getDPMBase()->mpiInsertParticleCheck(P);
     }
 
     //Add the particle if it is in the mpi domain or if the domain is not yet defined
     if(insertParticle)
     {
 #endif
         //Puts the particle in the Particle list
         BaseHandler<BaseParticle>::addObject(P);
         if (getDPMBase() != nullptr)
         {
             //This places the particle in this grid
             getDPMBase()->hGridInsertParticle(P);
             //This computes where the particle currently is in the grid
             getDPMBase()->hGridUpdateParticle(P);
         }
         //set the particleHandler pointer
         P->setHandler(this);
         //compute mass of the particle
         P->getSpecies()->computeMass(P);
         //Check if this particle has new extrema
         checkExtrema(P);
         if (!P->isSphericalParticle())
         {
             getDPMBase()->setRotation(true);
         }
 #ifdef MERCURY_USE_MPI
         P->setPeriodicComplexity(std::vector<int>(0));
     }
     else
     {
         logger.assert(!P->isMPIParticle(),"Can't add mpi particle as it does not exist");
         logger.assert(!P->isPeriodicGhostParticle(),"Can't add mpi particle as it does not exist");
         //Somehwere a really new particle has been added, so to keep the ID's globally unique, we also update
         //the unique value on all other processors
         BaseHandler<BaseParticle>::increaseId();
     }
 
     //Add the particle to the ghost particle lists
     getDPMBase()->insertGhostParticle(P);
     //Check if this new particle requires an update in the mpi grid (interactionDistance).
     getDPMBase()->updateGhostGrid(P);
 
     //Delete the particle that was supposed to be added (but was not)
     if(!insertParticle)
     {
         delete P;
     }
 #endif
 }

void ParticleHandler::addObject	(	int	fromProcessor,
		BaseParticle *	p
	)

Adds a BaseParticle located at processor fromProcessor to toProcessor.

This function adds a particle to the simulation where the information of the particle is not available by the target processor.

When a certain processor generates a particle which needs to be inserted in a domain of another processor, this information needs to be transfered before the particle can be actually added

Parameters

[in]	fromProcessor	processor containing the particle data
[in,out]	particle	that contains the data and receives the data

Definition at line 247 of file ParticleHandler.cc.

References addObject(), MPIContainer::broadcast(), copyDataFromMPIParticleToParticle(), MPISphericalParticle::copyDataFromParticleToMPIParticle(), MPIContainer::getProcessorID(), MPIContainer::Instance(), logger, PARTICLE, and WARN.

 {
 #ifdef MERCURY_USE_MPI
     MPIContainer& communicator = MPIContainer::Instance();
 
     //The processor that contains the particle that needs to be copied needs to identify the target, and communicate this
     MPIParticle pInfo;
     if (communicator.getProcessorID() == fromProcessor)
     {
         pInfo.copyDataFromParticleToMPIParticle(p);
     }
 
     //Broadcast from processor i
     communicator.broadcast(&pInfo,MercuryMPIType::PARTICLE,fromProcessor);
     copyDataFromMPIParticleToParticle(&pInfo, p, this);
 
     //All processors now know have the same information and we can proceed with the collective add
     addObject(p);
 #else
     logger(WARN, "Function addObject(int fromProcessor, BaseParticle* p) should not be used in serial code");
 #endif
 }

void ParticleHandler::checkExtrema ( BaseParticle * P )

Checks if the extrema of this ParticleHandler needs updating.

Parameters

[in] P A pointer to the particle, which properties have to be checked against the ParticleHandlers extrema.

Definition at line 1141 of file ParticleHandler.cc.

References computeLargestParticle(), computeSmallestParticle(), BaseParticle::getMaxInteractionRadius(), largestParticle_, and smallestParticle_.

Referenced by addExistingObject(), addGhostObject(), addObject(), and BaseParticle::setRadius().

 {
     if (P == largestParticle_)
     {
         //if the properties of the largest particle changes
         computeLargestParticle();
     }
     else if (!largestParticle_ || P->getMaxInteractionRadius() > largestParticle_->getMaxInteractionRadius())
     {
         largestParticle_ = P;
     }
     
     if (P == smallestParticle_)
     {
         //if the properties of the smallest particle changes
         computeSmallestParticle();
     }
     else if (!smallestParticle_ || P->getMaxInteractionRadius() < smallestParticle_->getMaxInteractionRadius())
     {
         smallestParticle_ = P;
     }
 }

void ParticleHandler::checkExtremaOnDelete ( BaseParticle * P )

Checks if the extrema of this ParticleHandler needs updating when a particle is deleted.

Parameters

[in] P A pointer to the particle, which is going to get deleted.

Definition at line 1167 of file ParticleHandler.cc.

References computeLargestParticle(), computeSmallestParticle(), largestParticle_, and smallestParticle_.

Referenced by BaseParticle::~BaseParticle(), and SuperQuadricParticle::~SuperQuadricParticle().

 {
     if (P == largestParticle_)
     {
         computeLargestParticle();
     }
     if (P == smallestParticle_)
     {
         computeSmallestParticle();
     }
 }

void ParticleHandler::clear ( )

overridevirtual

Empties the whole ParticleHandler by removing all BaseParticle.

Note that the pointers to smallestParticle_ and largestParticle_ are set to nullptr since these particles don't exist anymore after calling this function.

Reimplemented from BaseHandler< BaseParticle >.

Definition at line 961 of file ParticleHandler.cc.

References BaseHandler< T >::clear(), largestParticle_, and smallestParticle_.

Referenced by CGHandler::evaluateRestartFiles(), operator=(), ParticleHandler(), FileReader::read(), DPMBase::read(), DPMBase::readNextDataFile(), and BaseCluster::setupInitialConditions().

 {
     smallestParticle_ = nullptr;
     largestParticle_ = nullptr;
     BaseHandler<BaseParticle>::clear();
 }

void ParticleHandler::computeAllMasses ( unsigned int indSpecies )

Computes the mass for all BaseParticle of the given species in this ParticleHandler.

Parameters

[in] indSpecies Unsigned integer with the index of the species for which the masses must be computed.

Definition at line 1183 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::objects_.

Referenced by SpeciesHandler::addObject(), DPMBase::readNextDataFile(), ParticleSpecies::setDensity(), DPMBase::setParticleDimensions(), and DPMBase::solve().

 {
     for (BaseParticle* particle : objects_)
     {
         if (particle->getIndSpecies() == indSpecies)
         {
             particle->getSpecies()->computeMass(particle);
         }
     }
 }

void ParticleHandler::computeAllMasses ( )

Computes the mass for all BaseParticle in this ParticleHandler.

Definition at line 1194 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::objects_.

 {
     for (BaseParticle* particle : objects_)
     {
         particle->getSpecies()->computeMass(particle);
     }
 }

void ParticleHandler::computeLargestParticle ( )

Computes the largest particle (by interaction radius) and sets it in largestParticle_.

Definition at line 460 of file ParticleHandler.cc.

References DEBUG, BaseParticle::getMaxInteractionRadius(), BaseHandler< BaseParticle >::getSize(), largestParticle_, logger, and BaseHandler< BaseParticle >::objects_.

Referenced by DeletionBoundary::checkBoundaryAfterParticleMoved(), checkExtrema(), checkExtremaOnDelete(), operator=(), and ParticleHandler().

 {
     if (getSize() == 0)
     {
         logger(DEBUG, "No particles, so cannot compute the largest particle.");
         largestParticle_ = nullptr;
         return;
     }
     Mdouble max = -std::numeric_limits<Mdouble>::max();
     largestParticle_ = nullptr;
     for (BaseParticle* const particle : objects_)
     {
         if (!(particle->isMPIParticle() || particle->isPeriodicGhostParticle()))
         {
             if (particle->getMaxInteractionRadius() > max)
             {
                 max = particle->getMaxInteractionRadius();
                 largestParticle_ = particle;
             }
         }
     }
 }

void ParticleHandler::computeSmallestParticle ( )

Computes the smallest particle (by interaction radius) and sets it in smallestParticle_.

Definition at line 436 of file ParticleHandler.cc.

References DEBUG, BaseParticle::getMaxInteractionRadius(), BaseHandler< BaseParticle >::getSize(), logger, BaseHandler< BaseParticle >::objects_, and smallestParticle_.

Referenced by DeletionBoundary::checkBoundaryAfterParticleMoved(), checkExtrema(), checkExtremaOnDelete(), operator=(), and ParticleHandler().

 {
     if (getSize() == 0)
     {
         logger(DEBUG, "No particles, so cannot compute the smallest particle.");
         
         smallestParticle_ = nullptr;
         return;
     }
     Mdouble min = std::numeric_limits<Mdouble>::max();
     smallestParticle_ = nullptr;
     for (BaseParticle* const particle : objects_)
     {
         if (!(particle->isMPIParticle() || particle->isPeriodicGhostParticle()))
         {
             if (particle->getMaxInteractionRadius() < min)
             {
                 min = particle->getMaxInteractionRadius();
                 smallestParticle_ = particle;
             }
         }
     }
 }

BaseParticle * ParticleHandler::createObject ( const std::string & type )

static

Reads BaseParticle into the ParticleHandler from restart data.

Parameters

[in] is The input stream from which the information is read.

Definition at line 1003 of file ParticleHandler.cc.

References ERROR, and logger.

Referenced by readAndCreateObject().

 {
     if (type == "BaseParticle") {
         //for backwards compatibility
         return new SphericalParticle;
     }
     else if (type == "SphericalParticle")
     {
         return new SphericalParticle;
     }
     else if (type == "LiquidFilmParticle")
     {
         return new LiquidFilmParticle;
     }
     else if (type == "SuperQuadricParticle")
     {
         return new SuperQuadricParticle;
     }
     else if (type == "ThermalParticle")
     {
         return new ThermalParticle;
     }
     else
     {
         logger(ERROR, "Particle type % not understood in restart file. Particle will not be read.", type);
         return nullptr;
     }
 }

Vec3D ParticleHandler::getAngularMomentum ( ) const

Definition at line 659 of file ParticleHandler.cc.

References getMPISum().

 {
     Vec3D momentum = {0, 0, 0};
     for (auto p : *this)
         if (!(p->isFixed() || p->isMPIParticle() || p->isPeriodicGhostParticle()))
             momentum += p->getAngularMomentum();
     return getMPISum(momentum);
 }

Vec3D ParticleHandler::getCentreOfMass ( ) const

Definition at line 638 of file ParticleHandler.cc.

References getMass(), getMassTimesPosition(), and constants::NaN.

Referenced by DPMBase::getCentreOfMass().

 {
     Mdouble m = getMass();
     if (m == 0)
     {
         Vec3D nanvec = {constants::NaN, constants::NaN, constants::NaN};
         return nanvec;
     }
     else
         return getMassTimesPosition() / m;
 }

BaseParticle * ParticleHandler::getFastestParticle ( ) const

Definition at line 694 of file ParticleHandler.cc.

References ERROR, getFastestParticleLocal(), and logger.

 {
 #ifdef MERCURY_USE_MPI
     logger(ERROR,"This function should not be used in parallel");
 #endif
     return getFastestParticleLocal();
 }

BaseParticle * ParticleHandler::getFastestParticleLocal ( ) const

Gets a pointer to the fastest BaseParticle in this ParticleHandler.

Returns: A pointer to the fastest BaseParticle in this ParticleHandler.

Definition at line 671 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::getSize(), logger, BaseHandler< BaseParticle >::objects_, and WARN.

Referenced by getFastestParticle().

 {
     if (getSize() == 0)
     {
         logger(WARN, "No particles to set getFastestParticle()");
         return nullptr;
     }
     BaseParticle* p = nullptr;
     Mdouble maxSpeed = -std::numeric_limits<Mdouble>::max();
     for (BaseParticle* const pLoop : objects_)
     {
         if (!(pLoop->isMPIParticle() || pLoop->isPeriodicGhostParticle()))
         {
             if ((pLoop->getVelocity().getLength()) > maxSpeed)
             {
                 maxSpeed = pLoop->getVelocity().getLength();
                 p = pLoop;
             }
         }
     }
     return p;
 }

BaseParticle * ParticleHandler::getHighestPositionComponentParticle ( int i ) const

Gets a pointer to the particle with the highest coordinates in direction i in this ParticleHandler.

Definition at line 876 of file ParticleHandler.cc.

References ERROR, getHighestPositionComponentParticleLocal(), and logger.

 {
 #ifdef MERCURY_USE_MPI
     logger(ERROR,"This function should not be used in parallel");
 #endif
     return getHighestPositionComponentParticleLocal(i);
 }

BaseParticle * ParticleHandler::getHighestPositionComponentParticleLocal ( int i ) const

Gets a pointer to the particle with the highest coordinates in direction i in this ParticleHandler.

Parameters

[in] i Direction for which one wants the particle with highest coordinates.

Returns: A pointer to the particle with the highest coordinates in direction i in this ParticleHandler.

Definition at line 852 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::getSize(), logger, BaseHandler< BaseParticle >::objects_, and WARN.

Referenced by getHighestPositionComponentParticle().

 {
     if (getSize() == 0)
     {
         logger(WARN, "No getHighestPositionComponentParticle(const int i) since there are no particles.");
         return nullptr;
     }
     BaseParticle* p = nullptr;
     Mdouble max = -std::numeric_limits<Mdouble>::max();
     for (BaseParticle* const pLoop : objects_)
     {
         if (!(pLoop->isMPIParticle() || pLoop->isPeriodicGhostParticle()))
         {
             if (pLoop->getPosition().getComponent(i) > max)
             {
                 max = pLoop->getPosition().getComponent(i);
                 p = pLoop;
             }
         }
     }
     
     return p;
 }

Mdouble ParticleHandler::getHighestPositionX ( ) const

Function returns the highest position in the x-direction.

This is a prototype example of how to obtain global particle attributes in the parallel code

Returns: Returns the highest x-position value of all particles

Definition at line 973 of file ParticleHandler.cc.

References MAX.

 {
     //Define the attribute function
     std::function<Mdouble(BaseParticle*)> particleAttribute = [](BaseParticle* p) { return p->getPosition().X; };
     
     //Obtain the MAX attribute
     Mdouble positionXGlobal = getParticleAttribute<Mdouble>(particleAttribute, AttributeType::MAX);
     
     return positionXGlobal;
 }

BaseParticle * ParticleHandler::getHighestVelocityComponentParticle ( int i ) const

Gets a pointer to the particle with the highest velocity in direction i in this ParticleHandler.

Definition at line 948 of file ParticleHandler.cc.

References ERROR, getHighestVelocityComponentParticleLocal(), and logger.

 {
 #ifdef MERCURY_USE_MPI
     logger(ERROR,"This function should not be used in parallel");
 #endif
     return getHighestVelocityComponentParticleLocal(i);
 }

BaseParticle * ParticleHandler::getHighestVelocityComponentParticleLocal ( int i ) const

Gets a pointer to the particle with the highest velocity in direction i in this ParticleHandler.

Parameters

[in] i Direction for which you want the particle with highest velocity.

Returns: A pointer to the particle with the highest velocity in direction i in this ParticleHandler.

Definition at line 925 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::getSize(), logger, BaseHandler< BaseParticle >::objects_, and WARN.

Referenced by getHighestVelocityComponentParticle().

 {
     if (!getSize())
     {
         logger(WARN, "No getHighestVelocityComponentParticle(const int i) since there are no particles");
         return nullptr;
     }
     BaseParticle* p = nullptr;
     Mdouble max = -std::numeric_limits<Mdouble>::max();
     for (BaseParticle* const pLoop : objects_)
     {
         if (!(pLoop->isMPIParticle() || pLoop->isPeriodicGhostParticle()))
         {
             if (pLoop->getVelocity().getComponent(i) > max)
             {
                 max = pLoop->getVelocity().getComponent(i);
                 p = pLoop;
             }
         }
     }
     return p;
 }

Mdouble ParticleHandler::getKineticEnergy ( ) const

Definition at line 541 of file ParticleHandler.cc.

References getKineticEnergyLocal(), and MPIContainer::Instance().

Referenced by DPMBase::writeEneTimeStep().

 {
 #ifdef MERCURY_USE_MPI
     Mdouble kineticEnergyLocal = getKineticEnergyLocal();
     Mdouble kineticEnergyGlobal = 0.0;
 
     //sum up over all domains
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(kineticEnergyLocal, kineticEnergyGlobal, MPI_SUM);
 
     return kineticEnergyGlobal;
 #else
     return getKineticEnergyLocal();
 #endif
 }

Mdouble ParticleHandler::getKineticEnergyLocal ( ) const

private

Definition at line 528 of file ParticleHandler.cc.

Referenced by getKineticEnergy().

 {
     Mdouble ene = 0;
     for (auto p : *this)
     {
         if (!(p->isMPIParticle() || p->isPeriodicGhostParticle()))
         {
             ene += p->getKineticEnergy();
         }
     }
     return ene;
 }

Mdouble ParticleHandler::getLargestInteractionRadius ( ) const

Returns the largest interaction radius.

Definition at line 756 of file ParticleHandler.cc.

References getLargestInteractionRadiusLocal(), and MPIContainer::Instance().

Referenced by DPMBase::read().

 {
 #ifdef MERCURY_USE_MPI
     Mdouble largestInteractionRadiusLocal = getLargestInteractionRadiusLocal();
     Mdouble largestInteractionRadiusGlobal = 0.0;
 
     //Obtain the global value
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(largestInteractionRadiusLocal, largestInteractionRadiusGlobal, MPI_MAX);
 
     return largestInteractionRadiusGlobal;
 #else
     return getLargestInteractionRadiusLocal();
 #endif
 }

Mdouble ParticleHandler::getLargestInteractionRadiusLocal ( ) const

Returns the largest interaction radius of the current domain.

Definition at line 741 of file ParticleHandler.cc.

References getLargestParticle(), getLargestParticleLocal(), and BaseParticle::getMaxInteractionRadius().

Referenced by MercuryBase::getHGridTargetMaxInteractionRadius(), and getLargestInteractionRadius().

 {
     if (!(getLargestParticleLocal() == nullptr))
     {
         return getLargestParticle()->getMaxInteractionRadius();
     }
     else
     {
         return 0.0;
     }
 }

BaseParticle * ParticleHandler::getLargestParticle ( ) const

Returns the pointer of the largest particle in the particle handler. When mercury is running in parallel this function throws an error since a pointer to another domain is useless.

Returns: A Pointer to the largest BaseParticle (by interactionRadius) in this ParticleHandler

Definition at line 518 of file ParticleHandler.cc.

References ERROR, getLargestParticleLocal(), and logger.

Referenced by DPMBase::checkParticleForInteractionLocalPeriodic(), ShearBoxBoundary::createHorizontalPeriodicParticles(), LeesEdwardsBoundary::createHorizontalPeriodicParticles(), CircularPeriodicBoundary::createPeriodicParticle(), SubcriticalMaserBoundaryTEST::createPeriodicParticle(), SubcriticalMaserBoundary::createPeriodicParticle(), AngledPeriodicBoundary::createPeriodicParticle(), PeriodicBoundary::createPeriodicParticle(), ShearBoxBoundary::createVerticalPeriodicParticles(), LeesEdwardsBoundary::createVerticalPeriodicParticles(), getLargestInteractionRadiusLocal(), MercuryBase::hGridNeedsRebuilding(), HGridOptimiser::initialise(), and BaseCluster::setupInitialConditions().

 {
 #ifdef MERCURY_USE_MPIO
     logger(ERROR,"getLargestParticle() should not be used in parallel; use getLargestInteractionRadius instead");
     return nullptr;
 #else
     return getLargestParticleLocal();
 #endif
 }

BaseParticle * ParticleHandler::getLargestParticleLocal ( ) const

Gets a pointer to the largest BaseParticle (by interactionRadius) in the ParticleHandler of the local domain.

Returns: A pointer to the largest BaseParticle (by interactionRadius) in this ParticleHandler.

Definition at line 510 of file ParticleHandler.cc.

References largestParticle_.

Referenced by ConstantMassFlowMaserBoundary::activateMaser(), ConstantMassFlowMaserBoundary::createPeriodicParticle(), getLargestInteractionRadiusLocal(), getLargestParticle(), and DPMBase::writeFstatHeader().

 {
     return largestParticle_;
 }

double ParticleHandler::getLiquidFilmVolume ( ) const

Definition at line 1348 of file ParticleHandler.cc.

References LiquidFilmParticle::getLiquidVolume(), getMPISum(), constants::i, and BaseHandler< BaseParticle >::objects_.

                                                   {
     double liquidVolume = 0;
     for (auto i : objects_) {
         auto j = dynamic_cast<LiquidFilmParticle*>(i);
         if (j and !j->isMPIParticle()) liquidVolume += j->getLiquidVolume();
     }
     return getMPISum(liquidVolume);
 };

BaseParticle * ParticleHandler::getLowestPositionComponentParticle ( int i ) const

Gets a pointer to the particle with the lowest coordinates in direction i in this ParticleHandler.

Definition at line 839 of file ParticleHandler.cc.

References ERROR, getLowestPositionComponentParticleLocal(), and logger.

 {
 #ifdef MERCURY_USE_MPI
     logger(ERROR,"This function should not be used in parallel");
 #endif
     return getLowestPositionComponentParticleLocal(i);
 }

BaseParticle * ParticleHandler::getLowestPositionComponentParticleLocal ( int i ) const

Gets a pointer to the particle with the lowest coordinates in direction i in this ParticleHandler.

Parameters

[in] i Direction for which you want the particle with lowest coordinates.

Returns: A pointer to the particle with the lowest coordinates in the given direction in this ParticleHandler.

Definition at line 813 of file ParticleHandler.cc.

References ERROR, BaseHandler< BaseParticle >::getSize(), logger, BaseHandler< BaseParticle >::objects_, and WARN.

Referenced by getLowestPositionComponentParticle().

 {
 #ifdef MERCURY_USE_MPI
     logger(ERROR,"getLowestPositionComponentParticle() not implemented yet in parallel");
 #endif
     if (getSize() == 0)
     {
         logger(WARN, "No getLowestPositionComponentParticle(const int i) since there are no particles.");
         return nullptr;
     }
     BaseParticle* p = nullptr;
     Mdouble min = std::numeric_limits<Mdouble>::max();
     for (BaseParticle* const pLoop : objects_)
     {
         if (!(pLoop->isMPIParticle() || pLoop->isPeriodicGhostParticle()))
         {
             if (pLoop->getPosition().getComponent(i) < min)
             {
                 min = pLoop->getPosition().getComponent(i);
                 p = pLoop;
             }
         }
     }
     return p;
 }

BaseParticle * ParticleHandler::getLowestVelocityComponentParticle ( int i ) const

Gets a pointer to the particle with the lowest velocity in direction i in this ParticleHandler.

Definition at line 912 of file ParticleHandler.cc.

References ERROR, getLowestVelocityComponentParticleLocal(), and logger.

 {
 #ifdef MERCURY_USE_MPI
     logger(ERROR,"This function should not be used in parallel");
 #endif
     return getLowestVelocityComponentParticleLocal(i);
 }

BaseParticle * ParticleHandler::getLowestVelocityComponentParticleLocal ( int i ) const

Gets a pointer to the particle with the lowest velocity in direction i in this ParticleHandler.

Parameters

[in] i Direction for which you want the particle with lowest velocity.

Returns: A pointer to the particle with the lowest velocity in direction i in this ParticleHandler.

Definition at line 889 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::getSize(), logger, BaseHandler< BaseParticle >::objects_, and WARN.

Referenced by getLowestVelocityComponentParticle().

 {
     if (getSize() == 0)
     {
         logger(WARN, "No getLowestVelocityComponentParticle(const int i) since there are no particles");
         return nullptr;
     }
     BaseParticle* p = nullptr;
     Mdouble min = std::numeric_limits<Mdouble>::max();
     for (BaseParticle* const pLoop : objects_)
     {
         if (!(pLoop->isMPIParticle() || pLoop->isPeriodicGhostParticle()))
         {
             if (pLoop->getVelocity().getComponent(i) < min)
             {
                 min = pLoop->getVelocity().getComponent(i);
                 p = pLoop;
             }
         }
     }
     return p;
 }

Mdouble ParticleHandler::getMass ( ) const

Definition at line 595 of file ParticleHandler.cc.

References getMassLocal(), and MPIContainer::Instance().

Referenced by FixedClusterInsertionBoundary::checkBoundaryBeforeTimeStep(), RandomClusterInsertionBoundary::checkBoundaryBeforeTimeStep(), getCentreOfMass(), DPMBase::getTotalMass(), and DPMBase::writeEneTimeStep().

 {
 #ifdef MERCURY_USE_MPI
     Mdouble massLocal = getMassLocal();
     Mdouble massGlobal = 0.0;
 
     //Sum up over all domains
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(massLocal, massGlobal, MPI_SUM);
 
     return massGlobal;
 #else
     return getMassLocal();
 #endif
 }

Mdouble ParticleHandler::getMassLocal ( ) const

private

Definition at line 586 of file ParticleHandler.cc.

Referenced by getMass().

 {
     Mdouble m = 0;
     for (auto p : *this)
         if (!(p->isFixed() || p->isMPIParticle() || p->isPeriodicGhostParticle()))
             m += p->getMass();
     return m;
 }

Vec3D ParticleHandler::getMassTimesPosition ( ) const

Definition at line 620 of file ParticleHandler.cc.

References getMassTimesPositionLocal(), MPIContainer::Instance(), Vec3D::X, Vec3D::Y, and Vec3D::Z.

Referenced by getCentreOfMass(), and DPMBase::writeEneTimeStep().

 {
 #ifdef MERCURY_USE_MPI
     Vec3D massTimesPositionLocal = getMassTimesPositionLocal();
     Vec3D massTimesPositionGlobal = {0.0, 0.0, 0.0};
 
     // Sum up over all domains
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(massTimesPositionLocal.X, massTimesPositionGlobal.X, MPI_SUM);
     communicator.allReduce(massTimesPositionLocal.Y, massTimesPositionGlobal.Y, MPI_SUM);
     communicator.allReduce(massTimesPositionLocal.Z, massTimesPositionGlobal.Z, MPI_SUM);
 
     return massTimesPositionGlobal;
 #else
     return getMassTimesPositionLocal();
 #endif
 }

Vec3D ParticleHandler::getMassTimesPositionLocal ( ) const

private

Definition at line 611 of file ParticleHandler.cc.

Referenced by getMassTimesPosition().

 {
     Vec3D com = {0, 0, 0};
     for (auto p : *this)
         if (!(p->isFixed() || p->isMPIParticle() || p->isPeriodicGhostParticle()))
             com += p->getMass() * p->getPosition();
     return com;
 }

Mdouble ParticleHandler::getMeanRadius ( ) const

Definition at line 788 of file ParticleHandler.cc.

References getNumberOfRealObjectsLocal(), BaseHandler< BaseParticle >::getSize(), getSumRadiusLocal(), and MPIContainer::Instance().

 {
 #ifdef MERCURY_USE_MPI
     Mdouble sumRadiusLocal = getSumRadiusLocal();
     unsigned numberOfRealParticlesLocal = getNumberOfRealObjectsLocal();
 
     Mdouble sumRadiusGlobal = 0.0;
     unsigned numberOfRealParticlesGlobal = 0;
 
     //Sum up over all domains
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(sumRadiusLocal, sumRadiusGlobal, MPI_SUM);
     communicator.allReduce(numberOfRealParticlesLocal, numberOfRealParticlesGlobal, MPI_SUM);
 
     return sumRadiusGlobal/numberOfRealParticlesGlobal;
 #else
     return getSumRadiusLocal() / getSize();
 #endif
 }

Vec3D ParticleHandler::getMomentum ( ) const

Definition at line 650 of file ParticleHandler.cc.

References getMPISum().

Referenced by DPMBase::getTotalMomentum().

 {
     Vec3D momentum = {0, 0, 0};
     for (auto p : *this)
         if (!(p->isFixed() || p->isMPIParticle() || p->isPeriodicGhostParticle()))
             momentum += p->getMomentum();
     return getMPISum(momentum);
 }

std::string ParticleHandler::getName ( ) const

overridevirtual

Returns the name of the handler, namely the string "ParticleHandler".

Returns: The string "ParticleHandler".

Implements BaseHandler< BaseParticle >.

Definition at line 1215 of file ParticleHandler.cc.

 {
     return "ParticleHandler";
 }

unsigned int ParticleHandler::getNumberOfFixedObjects ( ) const

Computes the number of fixed particles in the whole simulation.

Definition at line 1326 of file ParticleHandler.cc.

References getNumberOfFixedObjectsLocal(), and MPIContainer::Instance().

 {
 #ifdef MERCURY_USE_MPI
     unsigned int numberOfFixedParticlesLocal = getNumberOfFixedObjectsLocal();
     unsigned int numberOfFixedParticles = 0;
 
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(numberOfFixedParticlesLocal, numberOfFixedParticles, MPI_SUM);
     return numberOfFixedParticles;
 #else
     return getNumberOfFixedObjectsLocal();
 #endif
 }

unsigned int ParticleHandler::getNumberOfFixedObjectsLocal ( ) const

Computes the number of Fixed particles on a local domain.

Loops over all particles to check if the particle is fixed or not, in a local domain.

Returns: the number of fixed particles in a local domain

Definition at line 1310 of file ParticleHandler.cc.

References BaseParticle::isFixed().

Referenced by getNumberOfFixedObjects().

 {
     unsigned int numberOfFixedParticles = 0;
     for (BaseParticle* particle : *this)
     {
         if (particle->isFixed())
         {
             numberOfFixedParticles++;
         }
     }
     return numberOfFixedParticles;
 }

unsigned int ParticleHandler::getNumberOfFixedParticles ( ) const

Gets the number of particles that are fixed.

Definition at line 987 of file ParticleHandler.cc.

References NFixedParticles_.

 {
     return NFixedParticles_;
 }

unsigned int ParticleHandler::getNumberOfObjects ( ) const

overridevirtual

Returns the number of objects in the container. In parallel code this practice is forbidden to avoid confusion with real and fake particles. If the size of the container is wished, call size()

Reimplemented from BaseHandler< BaseParticle >.

Definition at line 1293 of file ParticleHandler.cc.

References MPIContainer::getNumberOfProcessors(), BaseHandler< BaseParticle >::getSize(), MPIContainer::Instance(), logger, and WARN.

Referenced by Chute::addFlowParticlesCompactly(), DPMBase::checkParticleForInteractionLocalPeriodic(), Chute::cleanChute(), DPMBase::computeAllForces(), getNumberOfUnfixedParticles(), DPMBase::integrateAfterForceComputation(), DPMBase::integrateBeforeForceComputation(), Chute::printTime(), and ChuteBottom::setupInitialConditions().

 {
 #ifdef MERCURY_USE_MPI
     MPIContainer& communicator = MPIContainer::Instance();
     if (communicator.getNumberOfProcessors() > 1)
     {
         logger(WARN,"When compiling with MPI please do not use getNumberOfObjects(). Instead use: getNumberOfRealObjectsLocal(), getNumberOfRealObjects() or getSize()");
     }
 #endif
     return getSize();
 }

unsigned int ParticleHandler::getNumberOfRealObjects ( ) const

Returns the number of real objects (on all processors)

Definition at line 1272 of file ParticleHandler.cc.

References MPIContainer::broadcast(), getNumberOfRealObjectsLocal(), BaseHandler< BaseParticle >::getSize(), and MPIContainer::Instance().

Referenced by DPMBase::decompose().

 {
 #ifdef MERCURY_USE_MPI
     MPIContainer& communicator = MPIContainer::Instance();
     unsigned int numberOfRealParticles = getNumberOfRealObjectsLocal();
 
     // \todo MX: use an allreduce here
     //Combine the total number of Particles into one number on processor 0
     communicator.reduce(numberOfRealParticles, MPI::SUM);
 
     //Broadcast new number to all the processorsi
     communicator.broadcast(numberOfRealParticles);
     return numberOfRealParticles;
 #else
     return getSize();
 #endif
 }

unsigned int ParticleHandler::getNumberOfRealObjectsLocal ( ) const

Returns the number of real objects on a local domain. MPI particles and periodic particles are neglected.

Returns: the number of real particles (neglecting MPI and periodic) on a local domain

Todo:: MX: in future also add the periodic mpi particles

Definition at line 1251 of file ParticleHandler.cc.

References DPMBase::domainHandler, DomainHandler::getCurrentDomain(), BaseHandler< BaseParticle >::getDPMBase(), PeriodicBoundaryHandler::getNumberOfPeriodicGhostParticles(), MPIContainer::getNumberOfProcessors(), Domain::getNumberOfTrueMPIParticles(), BaseHandler< BaseParticle >::getSize(), MPIContainer::Instance(), logger, and DPMBase::periodicBoundaryHandler.

Referenced by getMeanRadius(), getNumberOfRealObjects(), DPMBase::outputXBallsData(), and write().

 {
 #ifdef MERCURY_USE_MPI
     const MPIContainer& communicator = MPIContainer::Instance();
     if (communicator.getNumberOfProcessors() > 1)
     {
         unsigned int numberOfFakeParticles = 0;
         numberOfFakeParticles += getDPMBase()->domainHandler.getCurrentDomain()->getNumberOfTrueMPIParticles();
         numberOfFakeParticles += getDPMBase()->periodicBoundaryHandler.getNumberOfPeriodicGhostParticles();
         logger.assert(numberOfFakeParticles <= getSize(), "More fake particles than getSize()");
         return (getSize() - numberOfFakeParticles);
     }
     else
     {
         return getSize();
     }
 #else
     return getSize();
 #endif
 }

unsigned int ParticleHandler::getNumberOfUnfixedParticles ( ) const

Gets the number of particles that are not fixed.

Definition at line 995 of file ParticleHandler.cc.

References getNumberOfObjects(), and NFixedParticles_.

 {
     return getNumberOfObjects() - NFixedParticles_;
 }

template<typename T >

std::enable_if<std::is_scalar<T>::value, T>::type ParticleHandler::getParticleAttribute	(	std::function< T(BaseParticle *)>	attribute,
		AttributeType	type
	)		const

inline

Computes an attribute type (min/max/..) of a particle attribute(position/velocity) in the global domain.

Many functions the particleHandler return a pointer to a BaseParticle, i.e. the fastest particle, however in parallel this is not usefull as pointers can't be send across processes. This function gives the flexibility to find a global particle extremum such as the fastest particle Velocity or lowest particle position.

Parameters

[in]	attribute	A function that obtains a scalar from a particle. i.e. position or radius
[in]	type	An AttribyteType tells this function what to do with the attribute, take the maximum or the minimum

Returns: Returns a scalar value representing the AttributeType of the Attribute: In easier terms returns the max/min/... of a particle atribute such as radius

Definition at line 305 of file ParticleHandler.h.

References ERROR, getParticleAttributeLocal(), MPIContainer::Instance(), logger, MAX, and MIN.

     {
 #ifdef MERCURY_USE_MPI
         T particleAttributeLocal = getParticleAttributeLocal(attribute, type);
         T particleAttributeGlobal;
 
         //Communicate local to global using the approriate rule
         MPIContainer& communicator = MPIContainer::Instance();
         switch(type)
         {
             case AttributeType::MIN :
                 communicator.allReduce(particleAttributeLocal,particleAttributeGlobal,MPI_MIN);
                 break;
             case AttributeType::MAX :
                 communicator.allReduce(particleAttributeLocal,particleAttributeGlobal,MPI_MAX);
                 break;
             default :
                 logger(ERROR,"Attribute type is not recognised");
                 break;
         }
         return particleAttributeGlobal;
 #else
         return getParticleAttributeLocal(attribute, type);
 #endif
     }

template<typename T >

std::enable_if<std::is_scalar<T>::value, T>::type ParticleHandler::getParticleAttributeLocal	(	std::function< T(BaseParticle *)>	attribute,
		AttributeType	type
	)		const

inline

Computes an attribute type (min/max/..) of a particle attribute (position/velocity) in a local domain.

Computes an attribute type (min/max/..) of a particle attribute (position/velocity) in a local domain

Many functions the particleHandler return a pointer to a BaseParticle, i.e. the fastest particle, however in parallel this is not usefull as pointers can't be send across processes. This function gives the flexibility to find a global particle extremum such as the fastest particle Velocity or lowest particle position.

Parameters

[in]	attribute	A function that obtains a scalar from a particle. i.e. position or radius
[in]	type	An AttribyteType tells this function what to do with the attribute, take the maximum or the minimum

Returns: Returns a scalar value representing the AttributeType of the Attribute: In easier terms returns the max/min/... of a particle atribute such as radius

Definition at line 244 of file ParticleHandler.h.

References ERROR, logger, MAX, MIN, BaseHandler< BaseParticle >::objects_, and WARN.

Referenced by getParticleAttribute().

     {
         T attributeParticle;
         T attributeFinal;
         
         if ((*this).getSize() == 0)
         {
             logger(WARN, "ParticleHandler is empty: returning 0.0");
             attributeFinal = 0;
             return 0.0;
         }
         else
         {
             //Initialise with the first particle found
             attributeParticle = attribute(objects_[0]);
             attributeFinal = attributeParticle;
             
             //Findn the final attribute
             for (BaseParticle* particle : (*this))
             {
                 //Obtain the attribute
                 if (!(particle->isMPIParticle() || particle->isPeriodicGhostParticle() || particle->isFixed()))
                 {
                     attributeParticle = attribute(particle);
                 }
                 
                 //Decide what to do with the magnitude of the attribute
                 switch (type)
                 {
                     case AttributeType::MIN :
                         if (attributeParticle < attributeFinal)
                         {
                             attributeFinal = attributeParticle;
                         }
                         break;
                     case AttributeType::MAX :
                         if (attributeParticle > attributeFinal)
                         {
                             attributeFinal = attributeParticle;
                         }
                         break;
                     default :
                         logger(ERROR, "Attribute type is not recognised");
                         break;
                 }
             }
             return attributeFinal;
         }
     }

Mdouble ParticleHandler::getRotationalEnergy ( ) const

Definition at line 570 of file ParticleHandler.cc.

References getRotationalEnergyLocal(), and MPIContainer::Instance().

Referenced by DPMBase::writeEneTimeStep().

 {
 #ifdef MERCURY_USE_MPI
     Mdouble rotationalEnergyLocal = getRotationalEnergyLocal();
     Mdouble rotationalEnergyGlobal = 0.0;
 
     //sum up over all domains
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(rotationalEnergyLocal, rotationalEnergyGlobal, MPI_SUM);
 
     return rotationalEnergyGlobal;
 #else
     return getRotationalEnergyLocal();
 #endif
 }

Mdouble ParticleHandler::getRotationalEnergyLocal ( ) const

private

Definition at line 557 of file ParticleHandler.cc.

Referenced by getRotationalEnergy().

 {
     Mdouble ene = 0;
     for (auto p : *this)
     {
         if (!(p->isMPIParticle() || p->isPeriodicGhostParticle()))
         {
             ene += p->getRotationalEnergy();
         }
     }
     return ene;
 }

Mdouble ParticleHandler::getSmallestInteractionRadius ( ) const

Returns the smallest interaction radius.

Definition at line 720 of file ParticleHandler.cc.

References getSmallestInteractionRadiusLocal(), and MPIContainer::Instance().

 {
 #ifdef MERCURY_USE_MPI
     //Compute the local value
     Mdouble smallestInteractionRadiusLocal = getSmallestInteractionRadiusLocal();
     Mdouble smallestInteractionRadiusGlobal = 0.0;
 
     //Obtain the global value
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(smallestInteractionRadiusLocal, smallestInteractionRadiusGlobal, MPI_MIN);
 
     return smallestInteractionRadiusGlobal;
 
 #else
     return getSmallestInteractionRadiusLocal();
 #endif
 }

Mdouble ParticleHandler::getSmallestInteractionRadiusLocal ( ) const

Returns the smallest interaction radius of the current domain.

Definition at line 705 of file ParticleHandler.cc.

References BaseParticle::getMaxInteractionRadius(), and getSmallestParticleLocal().

Referenced by MercuryBase::getHGridTargetMinInteractionRadius(), and getSmallestInteractionRadius().

 {
     if (!(getSmallestParticleLocal() == nullptr))
     {
         return getSmallestParticleLocal()->getMaxInteractionRadius();
     }
     else
     {
         return 0.0;
     }
 }

BaseParticle * ParticleHandler::getSmallestParticle ( ) const

Gets a pointer to the smallest BaseParticle (by interactionRadius) in this ParticleHandler of the local domain. When mercury is running in parallel this function throws an error since a pointer to another domain is useless.

Returns: A pointer to the to the smallest BaseParticle (by interactionRadius) in this ParticleHandler.

Definition at line 496 of file ParticleHandler.cc.

References ERROR, getSmallestParticleLocal(), and logger.

Referenced by HGridOptimiser::initialise().

 {
 #ifdef MERCURY_USE_MPI
     logger(ERROR,"getSmallestParticle should not be used in parallel; use getSmallestInteractionRadius or ParticleSpecies::getSmallestParticleMass instead");
     return nullptr;
 #else
     return getSmallestParticleLocal();
 #endif
 }

BaseParticle * ParticleHandler::getSmallestParticleLocal ( ) const

Gets a pointer to the smallest BaseParticle (by interactionRadius) in this ParticleHandler of the local domain.

Returns: A pointer to the to the smallest BaseParticle (by interactionRadius) in this ParticleHandler.

Definition at line 487 of file ParticleHandler.cc.

References smallestParticle_.

Referenced by getSmallestInteractionRadiusLocal(), getSmallestParticle(), and DPMBase::writeFstatHeader().

 {
     return smallestParticle_;
 }

Mdouble ParticleHandler::getSumRadiusLocal ( ) const

private

Returns: The sum of all particle radii

Definition at line 775 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::objects_.

Referenced by getMeanRadius().

 {
     Mdouble sumRadius = 0;
     for (BaseParticle* const p : objects_)
     {
         if (!(p->isMPIParticle() || p->isPeriodicGhostParticle()))
         {
             sumRadius += p->getRadius();
         }
     }
     return sumRadius;
 }

Mdouble ParticleHandler::getVolume ( ) const

Definition at line 1231 of file ParticleHandler.cc.

References getVolumeLocal(), and MPIContainer::Instance().

Referenced by FixedClusterInsertionBoundary::checkBoundaryBeforeTimeStep(), and RandomClusterInsertionBoundary::checkBoundaryBeforeTimeStep().

 {
 #ifdef MERCURY_USE_MPI
     Mdouble volumeLocal = getVolumeLocal();
     Mdouble volumeGlobal = 0.0;
 
     // sum up over all domains
     MPIContainer& communicator = MPIContainer::Instance();
     communicator.allReduce(volumeLocal, volumeGlobal, MPI_SUM);
 
     return volumeGlobal;
 #else
     return getVolumeLocal();
 #endif
 }

Mdouble ParticleHandler::getVolumeLocal ( ) const

private

Definition at line 1220 of file ParticleHandler.cc.

Referenced by getVolume().

 {
     Mdouble volume = 0;
     for (auto p : *this)
     {
         if (!(p->isFixed() || p->isPeriodicGhostParticle() || p->isMPIParticle()))
             volume += p->getVolume();
     }
     return volume;
 }

ParticleHandler & ParticleHandler::operator= ( const ParticleHandler & rhs )

Assignment operator.

Parameters

[in] rhs The ParticleHandler on the right hand side of the assignment.

This is not a copy assignment operator! It copies the DPMBase and all BaseParticle, and sets the other variables to 0. After that, it computes the smallest and largest particle in this handler.

Definition at line 83 of file ParticleHandler.cc.

References clear(), computeLargestParticle(), computeSmallestParticle(), BaseHandler< BaseParticle >::copyContentsFromOtherHandler(), DEBUG, largestParticle_, logger, BaseHandler< BaseParticle >::objects_, and smallestParticle_.

 {
     if (this != &rhs)
     {
         clear();
         largestParticle_ = nullptr;
         smallestParticle_ = nullptr;
         copyContentsFromOtherHandler(rhs);
         if (!objects_.empty())
         {
             computeLargestParticle();
             computeSmallestParticle();
         }
     }
     logger(DEBUG, "ParticleHandler::operator = (const ParticleHandler& rhs) finished");
     return *this;
 }

void ParticleHandler::readAndAddObject ( std::istream & is )

overridevirtual

Create a new particle, based on the information from old-style restart data.

Create a new particle in the WallHandler, based on the information provided in a restart file.

Parameters

[in] is The input stream from which the information is read.

Implements BaseHandler< BaseParticle >.

Definition at line 1062 of file ParticleHandler.cc.

References addExistingObject(), and readAndCreateObject().

Referenced by DPMBase::read().

 {
     BaseParticle* o = readAndCreateObject(is);
     addExistingObject(o);
 }

BaseParticle * ParticleHandler::readAndCreateObject ( std::istream & is )

Create a new particle, based on the information provided in a restart file.

Parameters

[in] is The input stream from which the information is read.

Definition at line 1035 of file ParticleHandler.cc.

References createObject(), DEBUG, BaseHandler< BaseParticle >::getDPMBase(), BaseInteractable::getIndSpecies(), BaseHandler< BaseParticle >::getStorageCapacity(), logger, BaseParticle::read(), BaseParticle::setHandler(), and BaseParticle::setSpecies().

Referenced by InsertionBoundary::read(), and readAndAddObject().

 {
     std::string type;
     BaseParticle* particle = nullptr;
     if (getStorageCapacity() > 0)
     {
         is >> type;
         logger(DEBUG, "ParticleHandler::readAndCreateObject(is): type %", type);
         particle = createObject(type);
         particle->setHandler(this);
         particle->read(is);
     }
     else //for insertion boundaries
     {
         is >> type;
         logger(DEBUG, "ParticleHandler::readAndCreateObject(is): type %", type);
         particle = createObject(type);
         particle->setHandler(this);
         particle->read(is);
     }
     particle->setSpecies(getDPMBase()->speciesHandler.getObject(particle->getIndSpecies()));
     return particle;
 }

void ParticleHandler::removedFixedParticle ( )

Decrement of the number of fixed particles.

Todo:: MX: For Jonny, is this still required, keeping the parallel code in mind?

Definition at line 1207 of file ParticleHandler.cc.

References NFixedParticles_.

Referenced by BaseParticle::unfix(), and BaseParticle::~BaseParticle().

 {
     NFixedParticles_--;
 }

void ParticleHandler::removeGhostObject ( unsigned int index )

Removes a BaseParticle from the ParticleHandler without a global check, this is only to be done for mpi routines.

Parameters

[in] index The index of which BaseParticle has to be removed from this ParticleHandler.

The BaseParticle with index is removed and the last BaseParticle in the vector is moved to its position. It also removes the BaseParticle from the HGrid. This function is only called by the parallel routines where we are sure the particles have been flushed out of the communication boundaries.

Definition at line 410 of file ParticleHandler.cc.

References ERROR, BaseHandler< BaseParticle >::getDPMBase(), BaseHandler< BaseParticle >::getObject(), DPMBase::hGridRemoveParticle(), logger, and BaseHandler< T >::removeObject().

Referenced by DeletionBoundary::checkBoundaryAfterParticleMoved(), DPMBase::checkInteractionWithBoundaries(), and DPMBase::deleteGhostParticles().

 {
 #ifdef MERCURY_USE_MPI
 #ifdef CONTACT_LIST_HGRID
     getDPMBase()->getPossibleContactList().remove_ParticlePosibleContacts(getObject(id));
 #endif
     getDPMBase()->hGridRemoveParticle(getObject(index));
     BaseHandler<BaseParticle>::removeObject(index);
 #else
     logger(ERROR, "This function should only be used interally for mpi routines");
 #endif
 }

void ParticleHandler::removeLastObject ( )

Removes the last BaseParticle from the ParticleHandler.

Function that removes the last object from this ParticleHandler. It also removes the particle from the HGrid.

Definition at line 427 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::getDPMBase(), BaseHandler< BaseParticle >::getLastObject(), DPMBase::hGridRemoveParticle(), and BaseHandler< T >::removeLastObject().

 {
 #ifdef CONTACT_LIST_HGRID
     getDPMBase()->getPossibleContactList().remove_ParticlePosibleContacts(getLastObject());
 #endif
     getDPMBase()->hGridRemoveParticle(getLastObject());
     BaseHandler<BaseParticle>::removeLastObject();
 }

void ParticleHandler::removeObject ( unsigned int index )

override

Removes a BaseParticle from the ParticleHandler.

Parameters

[in] index The index of which BaseParticle has to be removed from this ParticleHandler.

The BaseParticle with index is removed and the last BaseParticle in the vector is moved to its position. It also removes the BaseParticle from the HGrid. When running this in parallel a warning is thrown that deleting particles might cause havoc in the communication between boundaries, as the deleted particle might still be in one of the boundary lists

Definition at line 384 of file ParticleHandler.cc.

References BaseHandler< BaseParticle >::getDPMBase(), MPIContainer::getNumberOfProcessors(), BaseHandler< BaseParticle >::getObject(), DPMBase::hGridRemoveParticle(), MPIContainer::Instance(), logger, BaseHandler< T >::removeObject(), and WARN.

Referenced by CircularPeriodicBoundary::checkBoundaryAfterParticleMoved(), DeletionBoundary::checkBoundaryAfterParticleMoved(), ConstantMassFlowMaserBoundary::checkBoundaryAfterParticleMoved(), Chute::cleanChute(), and DPMBase::removeDuplicatePeriodicParticles().

 {
 #ifdef MERCURY_USE_MPI
     MPIContainer& communicator = MPIContainer::Instance();
     if (communicator.getNumberOfProcessors() > 1 )
     {
         logger(WARN, "[ParticleHandler::removeObject(const unsigned int)] Using the function removeObject in parallel could lead to out-of-sync communication, Instead use deletion boundaries");
     }
 #endif
 #ifdef CONTACT_LIST_HGRID
     getDPMBase()->getPossibleContactList().remove_ParticlePosibleContacts(getObject(id));
 #endif
     getDPMBase()->hGridRemoveParticle(getObject(index));
     BaseHandler<BaseParticle>::removeObject(index);
 }

void ParticleHandler::write ( std::ostream & os ) const

Parameters

[in]	type	The first value of the position.
[in]	is	The input stream from which the information is read.

The old objects did not have their type in the beginning of the line. Instead, the first string of the file was the position in x-direction. Since we already read the first string of the file, we need to give it to this function and convert it to the position in x-direction. The rest of the stream is then read in the usual way.

Definition at line 1116 of file ParticleHandler.cc.

References getNumberOfRealObjectsLocal(), BaseHandler< BaseParticle >::getSize(), BaseParticle::isMPIParticle(), and BaseParticle::isPeriodicGhostParticle().

Referenced by DPMBase::write().

 {
 #ifdef MERCURY_USE_MPI
     os << "Particles " << getNumberOfRealObjectsLocal() << std::endl;
     for (BaseParticle* it : *this)
     {
         if (!it->isPeriodicGhostParticle() && !it->isMPIParticle())
         {
             os << (*it) << '\n';
         }
     }
 #else
     os << "Particles " << getSize() << '\n';
     for (BaseParticle* it : *this)
     {
         os << (*it) << '\n';
     }
 #endif
     //os.flush();
 }

Member Data Documentation

BaseParticle* ParticleHandler::largestParticle_

private

A pointer to the largest BaseParticle (by interactionRadius) in this ParticleHandler.

Todo:: TW: note that checkExtrema gets called if a particle gets created and its Species and Radius gets set, even if it's not yet included in the particleHandler! This is necessary to check a not included particle for overlaps before inserting it into the handler. Not sure if this is a sensible structure; to be discussed.

Definition at line 464 of file ParticleHandler.h.

Referenced by checkExtrema(), checkExtremaOnDelete(), clear(), computeLargestParticle(), getLargestParticleLocal(), operator=(), ParticleHandler(), and ~ParticleHandler().

unsigned int ParticleHandler::NFixedParticles_

private

Number of fixed particles.

Definition at line 474 of file ParticleHandler.h.

Referenced by addedFixedParticle(), getNumberOfFixedParticles(), getNumberOfUnfixedParticles(), and removedFixedParticle().

BaseParticle* ParticleHandler::smallestParticle_

private

A pointer to the smallest BaseParticle (by interactionRadius) in this ParticleHandler.

Definition at line 469 of file ParticleHandler.h.

Referenced by checkExtrema(), checkExtremaOnDelete(), clear(), computeSmallestParticle(), getSmallestParticleLocal(), operator=(), ParticleHandler(), and ~ParticleHandler().

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation