revision: v0.14
File List
Here is a list of all files with brief descriptions:
 1Particle4WallsRestartUnitTest.cpp
 5ParticlesRestartUnitTest.cpp
 AdhesiveForceUnitTest.cpp
 AirySavageHutter.cpp
 AngledPeriodicBoundary.cc
 AngledPeriodicBoundary.h
 AngledPeriodicBoundarySecondUnitTest.cpp
 AngledPeriodicBoundaryUnitTest.cpp
 AngleOfRepose.cpp
 obsolete_codes/AngleOfRepose.cpp
 ArcWall.cc
 ArcWall.h
 ArcWallUnitTest.cpp
 AxisymmetricHopper.h
 AxisymmetricHopperSelfTest.cpp
 AxisymmetricIntersectionOfWalls.cc
 AxisymmetricIntersectionOfWalls.h
 AxisymmetricWallSelfTest.cpp
 Base_X_Y_Z.cc
 Base_X_Y_Z.h
 Base_XY_XZ_YZ.cc
 Base_XY_XZ_YZ.h
 BaseAdhesiveForce.h
 BaseBoundary.cc
 BaseBoundary.h
 BaseCG.cc
 BaseCG.h
 BaseCluster.cc
 BaseCluster.h
 BaseClusterInsertionBoundary.cc
 BaseClusterInsertionBoundary.h
 BaseCoordinates.cc
 BaseCoordinates.h
 BaseForce.h
 BaseFrictionForce.h
 BaseHandler.h
 BaseInteractable.cc
 BaseInteractable.h
 BaseInteraction.cc
 BaseInteraction.h
 BaseNormalForce.cc
 BaseNormalForce.h
 BaseObject.cc
 BaseObject.h
 BaseParticle.cc
 BaseParticle.h
 BasePeriodicBoundary.cc
 BasePeriodicBoundary.h
 BaseSpecies.cc
 BaseSpecies.h
 BaseVTKWriter.h
 BaseWall.cc
 BaseWall.h
 BasicIntersectionOfWalls.cc
 BasicIntersectionOfWalls.h
 BasicUnionOfWalls.cc
 BasicUnionOfWalls.h
 Beger.cpp
 bidisperse.cpp
 obsolete_codes/bidisperse.cpp
 BidisperseCubeInsertionBoundary.cc
 BidisperseCubeInsertionBoundary.h
 Binary.cpp
 BinaryDensities.cpp
 BinaryReader.cc
 BinaryReader.h
 BinaryReaderSTL1by1by1bySquareUnitTest.cpp
 BinaryReaderSTLOneTriangleUnitTest.cpp
 BondedInteraction.cc
 BondedInteraction.h
 BondedSpecies.cc
 BondedSpecies.h
 BouncingSuperQuadricSelfTest.cpp
 BoundariesSelfTest.cpp
 BoundaryHandler.cc
 BoundaryHandler.h
 BoundaryVTKWriter.cc
 BoundaryVTKWriter.h
 BoundingRadiusUnitTest.cpp
 Box.cc
 Box.h
 Case.cc
 Case.h
 centerofmass.cpp
 CG.h
 CG.hcc
 CG3DPackingUnitTest.cpp
 CGBasicSelfTest.cpp
 CGHandler.cc
 CGHandler.h
 CGHandlerLargeSelfTest.cpp
 CGHandlerRadialSelfTest.cpp
 CGHandlerSelfTest.cpp
 CGLiquidsUnitTest.cpp
 CGMomentUnitTest.cpp
 CGParticleParticleUnitTest.cpp
 CGParticleWallUnitTest.cpp
 CGPoint.h
 CGReadFilesUnitTest.cpp
 CGSelectRegionSelfTest.cpp
 CGStandardDeviationUnitTest.cpp
 CGStaticBalanceSelfTest.cpp
 Chain.cpp
 ChargedBondedInteraction.cc
 ChargedBondedInteraction.h
 ChargedBondedInteractionSelfTest.cpp
 ChargedBondedParticleUnitTest.cpp
 ChargedBondedSpecies.cc
 ChargedBondedSpecies.h
 Chute.cc
 Chute.h
 chute_periodic_autorun.cpp
 chute_periodic_restart.cpp
 ChuteBottom.cc
 ChuteBottom.h
 ChuteDemo.cpp
 ChuteInsertionBoundary.cc
 ChuteInsertionBoundary.h
 ChutePeriodicDemo.cpp
 ChuteRestartDemo.cpp
 ChuteWithHopper.cc
 ChuteWithHopper.h
 ChuteWithPeriodicInflow.cpp
 ChuteWithPeriodicInflow.h
 ChuteWithPeriodicInflowAndContraction.cpp
 ChuteWithPeriodicInflowAndVariableBottom.cpp
 ChuteWithStdInflow.cpp
 ChuteWithVerticalHopper.h
 ChuteWithWedge.cpp
 ChuteWithWedgeLarge.cpp
 CircularPeriodicBoundary.cc
 CircularPeriodicBoundary.h
 ClayParticles.cpp
 ClosedCSCRestart.cpp
 ClosedCSCRun.cpp
 ClosedCSCStats.cpp
 ClosedCSCWalls.cpp
 ClusterGenerator.cc
 ClusterGenerator.h
 CMakeDefinitions.cc
 CMakeDefinitions.h
 Coil.cc
 Coil.h
 CoilSelfTest.cpp
 CombineParallelDataFiles.cpp
 Combtooth.cc
 Combtooth.h
 ComputeVolumeFractionSelfTest.cpp
 ConstantMassFlowMaserBoundary.cc
 ConstantMassFlowMaserBoundary.h
 ConstantMassFlowMaserBoundaryMixedSpeciesSelfTest.cpp
 ConstantMassFlowMaserSelfTest.cpp
 ConstantRestitutionSelfTest.cpp
 ContactDetectionIntersectionOfWallsSelfTest.cpp
 ContactDetectionNormalSpheresUnitTest.cpp
 ContactDetectionRotatedSpheresUnitTest.cpp
 ContactDetectionUnitTest.cpp
 ContactWithWallUnitTest.cpp
 ContinuousTilt.cpp
 ContractionWithPeriodicInflow.cpp
 ConvertP4Files.cpp
 CSCInit.cpp
 CSCRestart.cpp
 CSCRun.cpp
 CSCStats.cpp
 CSCWalls.cpp
 csvReader.cc
 csvReader.h
 CubeDeletionBoundary.cc
 CubeDeletionBoundary.h
 CubeDeletionBoundarySelfTest.cpp
 CubeInsertionBoundary.cc
 CubeInsertionBoundary.h
 CubicCell.cpp
 CubicPackingSelfTest.cpp
 CurvyChute.cc
 CurvyChute.h
 CylindricalCoordinatesUnitTest.cpp
 CylindricalWall.cc
 CylindricalWall.h
 data2pvd.cpp
 dec13_A254_Hi0075_RC06_MU05.cpp
 DeletionBoundary.cc
 DeletionBoundary.h
 DeletionBoundarySelfTest.cpp
 demoparams.cpp
 DensitySizeSeg_Belt_WarreJan_25_75.cpp
 DensitySizeSegregation.cpp
 Dipole.cc
 Dipole.h
 DistributionToPSDSelfTest.cpp
 document.h
 Domain.cc
 Domain.h
 DomainHandler.cc
 DomainHandler.h
 DPMBase.cc
 DPMBase.h
 DPMBaseXBalls.icc
 DrivenParticleUnitTest.cpp
 DropletBoundary.cc
 DropletBoundary.h
 DropletBoundarySelfTest.cpp
 elastic_gas.cpp
 elastic_gas_with_gravity.cpp
 ElasticSuperQuadricUnitTest.cpp
 EllipsoidsBouncingOnWallDemo.cpp
 EllipsoidSelfTest.cpp
 EmptyAdhesiveInteraction.cc
 EmptyAdhesiveInteraction.h
 EmptyAdhesiveSpecies.cc
 EmptyAdhesiveSpecies.h
 EmptyFrictionInteraction.cc
 EmptyFrictionInteraction.h
 EmptyFrictionSpecies.cc
 EmptyFrictionSpecies.h
 EnergyUnitTest.cpp
 ExtendedMath.cc
 ExtendedMath.h
 ExtremeOverlapUnitTest.cpp
 ExtremeOverlapWithWallsUnitTest.cpp
 File.cc
 File.h
 filestream.h
 FindParticlesSelfTest.cpp
 FiveParticles.cpp
 FixedClusterInsertionBoundary.cc
 FixedClusterInsertionBoundary.h
 FixedClusterInsertionBoundaryUnitTest.cpp
 FlowFrontChute.cpp
 flowRule.cpp
 flowRule_restart.cpp
 flowRule_studyHeightAngle.cpp
 flowRule_StudyHeightAngle.cpp
 flowRuleDiego_HeightAngle.cpp
 flowRuleGlass_studyHeightAngle.cpp
 flowRuleHertz_studyHeightAngle.cpp
 flowRulePlastic_studyHeightAngle.cpp
 FlowRuleRoughToSmooth.cpp
 flowRuleSelfTest.cpp
 FluxAndPeriodicBoundarySelfTest.cpp
 FluxBoundary.cc
 FluxBoundary.h
 FluxBoundarySelfTest.cpp
 ForceLawsMPI2Test.cpp
 ForceSelfTest.cpp
 free_cooling.cpp
 FreeCooling2DinWalls.cpp
 FreeCooling2DinWallsDemo.cpp
 FreeCooling3DDemo.cpp
 FreeCooling3DinWallsDemo.cpp
 FreeCoolingAdhesiveDemo.cpp
 FreeCoolingDemo.cpp
 FreeFallHertzMindlinUnitTest.cpp
 FreeFallInteractionSelfTest.cpp
 FreeFallRestart.cpp
 FreeFallRestartUnitTest.cpp
 FreeFallSelfTest.cpp
 FrictionInteraction.cc
 FrictionInteraction.h
 FrictionSpecies.cc
 FrictionSpecies.h
 fstatistics.cpp
 FullRestartSelfTest.cpp
 functions.h
 Funnel.cc
 Funnel.h
 Gauss.h
 Gauss.hcc
 GeneralDefine.h
 genericstream.h
 GetDistanceAndNormalForIntersectionOfWalls.cpp
 GetDistanceAndNormalForScrew.cpp
 GetDistanceAndNormalForTriangleWall.cpp
 GetDistanceAndNormalForTriangleWallsSelfTest.cpp
 GlasPeriodic.h
 obsolete_codes/GlasPeriodic.h
 GradVelocityField.cc
 GradVelocityField.h
 granular_jet_thomas.cpp
 GranularCollapseDemo.cpp
 GranularJet.cpp
 granularJet.cpp
 HandlerConstructorDestructorUnitTest.cpp
 HeaterBoundary.cc
 HeaterBoundary.h
 HeaterBoundaryTest.cpp
 HeatFluidCoupledHertzianViscoelasticMindlinLiquidBridgeWilletSpecies.h
 HeatFluidCoupledParticle.cc
 HeatFluidCoupledParticle.h
 HeatFluidCoupledSpecies.h
 Heaviside.h
 HelperFunctionsUnitTest.cpp
 Helpers.cc
 Helpers.h
 HertzContactRestitutionUnitTest.cpp
 Hertzian2DSelfTest.cpp
 HertzianSinterForceUnitTest.cpp
 HertzianSinterFrictionSpecies.h
 HertzianSinterInteraction.cc
 HertzianSinterInteraction.h
 HertzianSinterNormalSpecies.cc
 HertzianSinterNormalSpecies.h
 HertzianSinterSlidingFrictionSpecies.h
 HertzianSinterSpecies.h
 HertzianViscoelasticFrictionChargedBondedSpecies.h
 HertzianViscoelasticFrictionIrreversibleAdhesiveSpecies.h
 HertzianViscoelasticFrictionReversibleAdhesiveSpecies.h
 HertzianViscoelasticFrictionSpecies.h
 HertzianViscoelasticInteraction.cc
 HertzianViscoelasticInteraction.h
 HertzianViscoelasticIrreversibleAdhesiveSpecies.h
 HertzianViscoelasticMindlinLiquidBridgeSpecies.h
 HertzianViscoelasticMindlinLiquidMigrationWilletSpecies.h
 HertzianViscoelasticMindlinRollingTorsionSpecies.h
 HertzianViscoelasticMindlinSpecies.h
 HertzianViscoelasticNormalSpecies.cc
 HertzianViscoelasticNormalSpecies.h
 HertzianViscoelasticReversibleAdhesiveSpecies.h
 HertzianViscoelasticSlidingFrictionIrreversibleAdhesiveSpecies.h
 HertzianViscoelasticSlidingFrictionParhamiMcMeekingSinterSpecies.h
 HertzianViscoelasticSlidingFrictionReversibleAdhesiveSpecies.h
 HertzianViscoelasticSlidingFrictionSpecies.h
 HertzianViscoelasticSpecies.h
 HGrid.cc
 HGrid.h
 HGridCell.h
 HGridOptimiser.cc
 HGridOptimiser.h
 HGridUnitTest.cpp
 HGridUpdateUnitTest.cpp
 Hopper3dDemo.cpp
 HopperInsertionBoundary.cc
 HopperInsertionBoundary.h
 HopperSelfTest.cpp
 HorizontalBaseScrew.cc
 HorizontalBaseScrew.h
 HorizontalMixer.h
 HorizontalMixerRun.cpp
 HorizontalMixerWalls.cpp
 HorizontalScrew.cc
 HorizontalScrew.h
 HourGlass2DDemo.cpp
 HourGlass2DDemoMPI.cpp
 HourGlass3DDemo.cpp
 HourGlassSelfTest.cpp
 hstop.cpp
 hstop_demo.cpp
 hstop_relaunch.cpp
 hstop_restart.cpp
 hstop_StudyHeightHmaxAngle.cpp
 obsolete_codes/hstop_StudyHeightHmaxAngle.cpp
 hstop_StudyHeightHmaxAngle_exponential.cpp
 hstop_StudyHeightHminAngle.cpp
 obsolete_codes/hstop_StudyHeightHminAngle.cpp
 hstopGlass_StudyHeightHmaxAngle.cpp
 obsolete_codes/hstopGlass_StudyHeightHmaxAngle.cpp
 hstopHertz_StudyHeightHmaxAngle.cpp
 obsolete_codes/hstopHertz_StudyHeightHmaxAngle.cpp
 hstopHertzian_StudyHeightHmaxAngle.cpp
 impact.cpp
 InclinedPlaneUnitTest.cpp
 InertiaTensorUnitTest.cpp
 InfiniteWall.cc
 InfiniteWall.h
 InfiniteWallWithHole.cc
 InfiniteWallWithHole.h
 inflowFromPeriodic.cpp
 inflowFromPeriodic.h
 inflowFromPeriodic_restart.cpp
 InsertionBoundary.cc
 InsertionBoundary.h
 InsertionBoundaryMPI2Test.cpp
 InsertionBoundarySelfTest.cpp
 InsertionBoundarySelfTestMPI.cpp
 IntegralType.h
 Interaction.h
 InteractionHandler.cc
 InteractionHandler.h
 InteractionHandlerSpeedTest.cpp
 InteractionVTKWriter.cc
 InteractionVTKWriter.h
 IntersectionOfWalls.cc
 IntersectionOfWalls.h
 IrreversibleAdhesiveInteraction.cc
 IrreversibleAdhesiveInteraction.h
 IrreversibleAdhesiveSpecies.cc
 IrreversibleAdhesiveSpecies.h
 JonnyTools.h
 Lawine.cpp
 lebedev_095.cc
 lebedev_095.h
 LeesEdwardsBoundary.cc
 LeesEdwardsBoundary.h
 LeesEdwardsDemo.cpp
 LeesEdwardsSelfTest.cpp
 LevelSetUnitTest.cpp
 LevelSetWall.cc
 LevelSetWall.h
 Linear.h
 LinearPlasticViscoelasticFrictionIrreversibleAdhesiveSpecies.h
 LinearPlasticViscoelasticFrictionLiquidBridgeWilletSpecies.h
 LinearPlasticViscoelasticFrictionReversibleAdhesiveSpecies.h
 LinearPlasticViscoelasticFrictionSpecies.h
 LinearPlasticViscoelasticInteraction.cc
 LinearPlasticViscoelasticInteraction.h
 LinearPlasticViscoelasticIrreversibleAdhesiveSpecies.h
 LinearPlasticViscoelasticNormalSpecies.cc
 LinearPlasticViscoelasticNormalSpecies.h
 LinearPlasticViscoelasticRegimeSinterSpecies.h
 LinearPlasticViscoelasticReversibleAdhesiveSpecies.h
 LinearPlasticViscoelasticSlidingFrictionIrreversibleAdhesiveSpecies.h
 LinearPlasticViscoelasticSlidingFrictionLiquidMigrationWilletSpecies.h
 LinearPlasticViscoelasticSlidingFrictionReversibleAdhesiveSpecies.h
 LinearPlasticViscoelasticSlidingFrictionSpecies.h
 LinearPlasticViscoelasticSpecies.h
 LinearViscoelasticBondedSpecies.h
 LinearViscoelasticFrictionBondedSpecies.h
 LinearViscoelasticFrictionChargedBondedSpecies.h
 LinearViscoelasticFrictionIrreversibleAdhesiveSpecies.h
 LinearViscoelasticFrictionLiquidBridgeWilletSpecies.h
 LinearViscoelasticFrictionLiquidMigrationWilletSpecies.h
 LinearViscoelasticFrictionReversibleAdhesiveSpecies.h
 LinearViscoelasticFrictionSpecies.h
 LinearViscoelasticInteraction.cc
 LinearViscoelasticInteraction.h
 LinearViscoelasticIrreversibleAdhesiveSpecies.h
 LinearViscoelasticNormalSpecies.cc
 LinearViscoelasticNormalSpecies.h
 LinearViscoelasticReversibleAdhesiveSpecies.h
 LinearViscoelasticSlidingFrictionBondedSpecies.h
 LinearViscoelasticSlidingFrictionIrreversibleAdhesiveSpecies.h
 LinearViscoelasticSlidingFrictionReversibleAdhesiveSpecies.h
 LinearViscoelasticSlidingFrictionSpecies.h
 LinearViscoelasticSpecies.h
 LinearViscoelasticUnitTest.cpp
 LiquidBridgeWilletInteraction.cc
 LiquidBridgeWilletInteraction.h
 LiquidBridgeWilletSpecies.cc
 LiquidBridgeWilletSpecies.h
 LiquidFilmParticle.cc
 LiquidFilmParticle.h
 LiquidMigrationFields.cc
 LiquidMigrationFields.h
 LiquidMigrationMPI2Test.cpp
 LiquidMigrationPeriodicBoundaryUnitTest.cpp
 LiquidMigrationSelfTest.cpp
 LiquidMigrationTwoSpeciesSelfTest.cpp
 LiquidMigrationWilletInteraction.cc
 LiquidMigrationWilletInteraction.h
 LiquidMigrationWilletSpecies.cc
 LiquidMigrationWilletSpecies.h
 livestatistics.cpp
 obsolete_codes/livestatistics.cpp
 liveStatistics.cpp
 LocalExpansion.cc
 LocalExpansion.h
 Logger.cc
 Logger.h
 LoggerUnitTest.cpp
 LongPeriodicChute.cpp
 Lucy.h
 makebottom.cpp
 MarbleRun.cpp
 MarbleRunWithSeesaw.cpp
 MaserChuteUnitTestMPI.cpp
 MaserRepeatedOutInMPI2Test.cpp
 MathCheck.cpp
 Matrix.cc
 Matrix.h
 MatrixSymmetric.cc
 MatrixSymmetric.h
 mdCLR.icc
 Membrane.cc
 Membrane.h
 MembraneDemo.cpp
 mercury.cpp
 Mercury2D.cc
 Mercury2D.h
 Mercury3D.cc
 Mercury3D.h
 Mercury3DRestart.cpp
 Mercury3DRestart.h
 MercuryBase.cc
 MercuryBase.h
 MercuryCG.cpp
 MercuryCGSelfTest.cpp
 MercuryData.h
 MercuryLogo.cpp
 MercuryOS.h
 MercuryProb.h
 MercuryTime.h
 MeshTriangle.cc
 MeshTriangle.h
 MindlinInteraction.cc
 MindlinInteraction.h
 MindlinRollingTorsionInteraction.cc
 MindlinRollingTorsionInteraction.h
 MindlinRollingTorsionSpecies.cc
 MindlinRollingTorsionSpecies.h
 MindlinSelfTest.cpp
 MindlinSpecies.cc
 MindlinSpecies.h
 MinimalExampleDrum.cpp
 MixedSpecies.h
 MonodispersedDrum.cpp
 MonodisperseSmoothInclinedChute.cpp
 MonodisperseSmoothInclinedChutePatternInflow.cpp
 MovingIntersectionOfWallsUnitTest.cpp
 MovingWallsUnitTest.cpp
 MovingWallUnitTest.cpp
 MpiContainer.cc
 MpiContainer.h
 MpiDataClass.cc
 MpiDataClass.h
 MPIInteraction.h
 MultiplePSDSelfTest.cpp
 Multipole.cc
 Multipole.h
 NautaMixer.cpp
 NewtonsCradleSelfTest.cpp
 no_seg.cpp
 NormalisedPolynomial.h
 NormalisedPolynomial.hcc
 NozzleDemo.cpp
 NozzleSelfTest.cpp
 NumericalVector.h
 NurbsSurface.cc
 NurbsSurface.h
 NurbsSurfaceUnitTest.cpp
 NurbsUtils.cc
 NurbsUtils.h
 NurbsWall.cc
 NurbsWall.h
 NurbsWallSelfTest.cpp
 NurbsWallUnitTest.cpp
 O.cc
 O.h
 ObliqueImpactSelfTest.cpp
 OrientationField.cc
 OrientationField.h
 OSDrum.cpp
 OSHertzSelfTest.cpp
 OSMindlinSelfTest.cpp
 OSPenetration.cpp
 OSSilo.cpp
 p3statistics.cpp
 p4statistics.cpp
 Panel.cc
 Panel.h
 ParabolaChute.cc
 ParabolaChute.h
 ParallelUnitTestMPI.cpp
 ParameterStudy1DDemo.cpp
 ParameterStudy2DDemo.cpp
 ParameterStudy3DDemo.cpp
 ParhamiMcKeepingParticlePairSelfTest.cpp
 ParhamiMcMeekingSinterInteraction.cc
 ParhamiMcMeekingSinterInteraction.h
 ParhamiMcMeekingSinterSpecies.cc
 ParhamiMcMeekingSinterSpecies.h
 ParticleAnalytics2Mercury.cpp
 ParticleCreationSelfTest.cpp
 ParticleHandler.cc
 ParticleHandler.h
 ParticleHandlerSpeedTest.cpp
 ParticleInclusion.cpp
 Particles.h
 ParticleSpecies.cc
 ParticleSpecies.h
 ParticleVtkWriter.cc
 ParticleVtkWriter.h
 patchlevel.h
 periodic.cpp
 PeriodicBoundary.cc
 PeriodicBoundary.h
 PeriodicBoundary1MPI2Test.cpp
 PeriodicBoundaryEnteringMpiDomainMPI2Test.cpp
 PeriodicBoundaryHandler.cc
 PeriodicBoundaryHandler.h
 PeriodicBoundaryUnitTestMPI.cpp
 PeriodicChuteUnitTestMPI.cpp
 PeriodicInflow2D.cpp
 PeriodicInflow2D_Initiation.cpp
 PeriodicWallsUnitTest.cpp
 PeriodicWallsWithSlidingFrictionUnitTest.cpp
 PlasticForceUnitTest.cpp
 PlotCoil.cpp
 PlotNURBS.cpp
 PlotPolygon.cpp
 PlotSilo.cpp
 PolydisperseInsertionBoundary.cc
 PolydisperseInsertionBoundary.h
 PolydisperseInsertionBoundarySelfTest.cpp
 Polynomial.h
 Polynomial.hcc
 PossibleContact.h
 PossibleContactList.h
 pow10.h
 pqSuperquadricTensorGlyphPanel.h
 prettywriter.h
 Problem.h
 ProtectiveWall.cpp
 PSD.cc
 PSD.h
 PSDManualInsertionSelfTest.cpp
 PSDSelfTest.cpp
 Quaternion.cc
 Quaternion.h
 QuaternionUnitTest.cpp
 QuaternionWallUnitTest.cpp
 R.cc
 R.h
 RandomClusterInsertionBoundary.cc
 RandomClusterInsertionBoundary.h
 RandomClusterInsertionBoundaryDemo.cpp
 RandomClusterInsertionBoundaryUnitTest.cpp
 RandomNumbersUnitTest.cpp
 rapidjson.h
 reader.h
 RegimeSinterForceUnitTest.cpp
 RegimeSinterInteraction.cc
 RegimeSinterInteraction.h
 RegimeSinterSpecies.cc
 RegimeSinterSpecies.h
 restart.cpp
 restart2.cpp
 restartedChute.cpp
 RestartToData.cpp
 RestrictedWall.cc
 RestrictedWall.h
 ReversibleAdhesiveInteraction.cc
 ReversibleAdhesiveInteraction.h
 ReversibleAdhesiveSpecies.cc
 ReversibleAdhesiveSpecies.h
 REVIsotropicCompressionDemo.cpp
 REVPureShearDemo.cpp
 REVSimpleShearDemo.cpp
 RNG.cc
 RNG.h
 RollingFrictionSelfTest.cpp
 RollingOverTriangleWallsSelfTest.cpp
 RotatedParticlesDemo.cpp
 roughBottomSelfTest.cpp
 RZ.cc
 RZ.h
 SaveCountUnitTest.cpp
 ScalingTest.cpp
 ScalingTestOldCompiler.cpp
 Screw.cc
 Screw.h
 ScrewsymmetricIntersectionOfWalls.cc
 ScrewsymmetricIntersectionOfWalls.h
 ScrewUnitTest.cpp
 Chute/segregation.cpp
 Segregation/segregation.cpp
 Chute/segregation_with_hopper.cpp
 Segregation/segregation_with_hopper.cpp
 SegregationNew.cpp
 SeparateFilesUnitTest.cpp
 Serialization.h
 ShapeGradientHessianUnitTest.cpp
 ShearBoxBoundary.cc
 ShearBoxBoundary.h
 ShiftingConstantMassFlowMaserBoundarySelfTest.cpp
 ShiftingMaserBoundarySelfTest.cpp
 Side.h
 Siegen.h
 SiegenRail.cpp
 SiegenRestitutionSelfTest.cpp
 SiegenSlide.cpp
 obsolete_codes/SilbertPeriodic.h
 SilbertPeriodic.h
 SilbertPeriodicSelfTest.cpp
 SimpleDrumSuperquadrics.cc
 SimpleDrumSuperquadrics.h
 SineWall.cc
 SineWall.h
 SingleParticleConstantTemperatureSelfTest.cpp
 SingleParticleIndenter.cpp
 SingleSphere.cpp
 SinterBed0SelfTest.cpp
 SinterBed1SelfTest.cpp
 SinterBed2SelfTest.cpp
 SinterForceUnitTest.cpp
 SinterFrictionReversibleAdhesiveSpecies.h
 SinterFrictionSpecies.h
 SinterInteraction.cc
 SinterInteraction.h
 SinterLinInteraction.cc
 SinterLinInteraction.h
 SinterLinNormalSpecies.cc
 SinterLinNormalSpecies.h
 SinterNormalSpecies.cc
 SinterNormalSpecies.h
 SinterPair.cpp
 SinterReversibleAdhesiveSpecies.h
 SinterSpecies.h
 SlidingFrictionInteraction.cc
 SlidingFrictionInteraction.h
 SlidingFrictionSpecies.cc
 SlidingFrictionSpecies.h
 SlidingFrictionUnitTest.cpp
 SlidingSpheresUnitTest.cpp
 SmallMatrix.h
 SmallMatrix_impl.h
 SmallMatrixUnitTest.cpp
 SmallVector.h
 SmallVectorUnitTest.cpp
 snapshot.cpp
 solid_walls.cpp
 Source.cc
 Source.h
 Species.h
 SpeciesHandler.cc
 SpeciesHandler.h
 SpeciesUnitTest.cpp
 SpeedTestParticleInteractions.cpp
 SpeedTestWallInteractions.cpp
 Sphere.cc
 Sphere.h
 SpheresSelfTest.cpp
 SphericalIndenter.h
 SphericalParticle.h
 SphericalParticleVtkWriter.cc
 SphericalParticleVtkWriter.h
 SphericalWall.cc
 SphericalWall.h
 SplitFiles.cpp
 SquareDrumTest.cpp
 SquarePackingSelfTest.cpp
 stack.h
 StandardFields.cc
 StandardFields.h
 static2d.cpp
 static2dSegregated.cpp
 static3d.cpp
 Statistics.h
 obsolete_codes/statistics_while_running.cpp
 statistics_while_running.cpp
 statistics_while_running_simple.cpp
 statistics_while_running_XY.cpp
 statistics_while_running_XZ.cpp
 StatisticsPoint.h
 StatisticsPoint.hcc
 statisticsTest.cpp
 StatisticsVector.h
 StatisticsVector.hcc
 statXY.cpp
 statXZ.cpp
 SteppedTilt.cpp
 STLReaderUnitTest.cpp
 STLRotationSelfTest.cpp
 STLTriangle.h
 StrainingFlow.cpp
 StressStrainControlBoundary.cc
 StressStrainControlBoundary.h
 StressStrainControlBoundarySelfTest.cpp
 strfunc.h
 stringbuffer.h
 SubcriticalMaserBoundary.cc
 SubcriticalMaserBoundary.h
 SubcriticalMaserBoundarySelfTest.cpp
 SubcriticalMaserBoundaryTEST.cc
 SubcriticalMaserBoundaryTEST.h
 SubcriticalMaserBoundaryTESTMPI2Test.cpp
 SuperQuadricParticle.cc
 SuperQuadricParticle.h
 SuperQuadricParticleVtkWriter.cc
 SuperQuadricParticleVtkWriter.h
 T_protectiveWall.cpp
 TangentialSpringEnergyConservationUnitTest.cpp
 TangentialSpringUnitTest.cpp
 TemplateDriver.cpp
 test.cpp
 testDrum.cpp
 testDrumRound1Serial.cpp
 ThermalInteraction.h
 ThermalParticle.cc
 ThermalParticle.h
 ThermalSinterLinFrictionReversibleAdhesiveSpecies.h
 ThermalSpecies.h
 TimeAveragedCG.h
 TimeAveragedCG.hcc
 TimeAveragedLebedevCG.h
 TimeAveragedLebedevCG.hcc
 TimeDependentPeriodicBoundary.cc
 TimeDependentPeriodicBoundary.h
 TimeDependentPeriodicBoundary3DSelfTest.cpp
 TimeDependentPeriodicBoundaryTest.cpp
 TimeSmoothedCG.h
 TimeSmoothedCG.hcc
 TimeSmoothedFields.h
 TorsionFrictionSelfTest.cpp
 TriangleWall.cc
 TriangleWall.h
 TriangleWallCubeSelfTest.cpp
 TriangleWallSelfTest.cpp
 TriangulatedScrewSelfTest.cpp
 TriangulatedStepSelfTest.cpp
 TriangulatedWall.cc
 TriangulatedWall.h
 TriangulatedWallSelfTest.cpp
 TunuguntlaBokhoveThornton2014.cpp
 Tutorial1.cpp
 Tutorial10.cpp
 Tutorial10MPI.cpp
 Tutorial11.cpp
 Tutorial12.cpp
 Tutorial2.cpp
 Tutorial3.cpp
 Tutorial4.cpp
 Tutorial5.cpp
 Tutorial6.cpp
 Tutorial7.cpp
 Tutorial8.cpp
 Tutorial9.cpp
 TwoBondedParticleElasticCollisionSelfTest.cpp
 TwoByTwoDomainMPI4Test.cpp
 TwoParticleElasticCollisionInteractionSelfTest.cpp
 TwoParticleElasticCollisionSelfTest.cpp
 UnionOfWallsSelfTest.cpp
 Utilities.h
 VariableBottom.cpp
 VariableBottomQuick.cpp
 VariousShapesDemo.cpp
 VChute.cc
 VChute.h
 Vec3DUnitTest.cpp
 Vector.cc
 Vector.h
 VerticalMixer.cpp
 VerticalMixer.h
 VerticalMixerAngledBlades.cpp
 VerticalMixerDemo.cpp
 vibratedBed.cpp
 VisualisationTest.cpp
 visualiseSinteringFromRestartFile.cpp
 VolumeUnitTest.cpp
 Vreman.cpp
 VremanHopper.cpp
 VremanRough.cpp
 VTKData.h
 vtkSuperquadricTensorGlyphFilter.h
 vtkTensorGlyphSameEigensystem.h
 WallHandler.cc
 WallHandler.h
 Walls.h
 WallSpeciesUnitTest.cpp
 WallVTKWriter.cc
 WallVTKWriter.h
 writer.h
 X.cc
 X.h
 XY.cc
 XY.h
 XYZ.cc
 XYZ.h
 XZ.cc
 XZ.h
 Y.cc
 Y.h
 YZ.cc
 YZ.h
 Z.cc
 Z.h